estimateR: an R package to estimate and monitor the effective reproductive number. - Jérémie Scire; Jana S. Huisman; Ana Grosu; Daniel C. Angst; Adrian Lison; Jinzhou Li; Marloes H. Maathuis; Sebastian Bonhoeffer; Tanja Stadler (BMC Bioinform., 2023)

Best practices for estimating and reporting epidemiological delay distributions of infectious diseases. - Kelly Charniga; Sang Woo Park; Andrei R. Akhmetzhanov; Anne Cori; Jonathan Dushoff; Sebastian Funk; Katelyn M. Gostic; Natalie M. Linton; Adrian Lison; Christopher E. Overton; Juliet R. C. Pulliam; Thomas Ward; et al. (PLoS Comput. Biol., 2024)

Generative Bayesian modeling to nowcast the effective reproduction number from line list data with missing symptom onset dates. - Adrian Lison; Sam Abbott; Jana S. Huisman; Tanja Stadler (PLoS Comput. Biol., 2024)