ESEfinder: a web resource to identify exonic splicing enhancers. - Luca Cartegni; Jinhua Wang; Zhengwei Zhu; Michael Q. Zhang; Adrian R. Krainer (Nucleic Acids Res., 2003)

Identification of Synaptic Targets of Drosophila Pumilio. - Gengxin Chen; Wanhe Li; Qing-Shuo Zhang; Michael Regulski; Nishi Sinha; Jody Barditch; Tim Tully; Adrian R. Krainer; Michael Q. Zhang; Josh Dubnau (PLoS Comput. Biol., 2008)

SpliceTrap: a method to quantify alternative splicing under single cellular conditions. - Jie Wu; Martin Akerman; Shuying Sun; W. Richard McCombie; Adrian R. Krainer; Michael Q. Zhang (Bioinform., 2011)

PSI-Sigma: a comprehensive splicing-detection method for short-read and long-read RNA-seq analysis. - Kuan-Ting Lin; Adrian R. Krainer (Bioinform., 2019)