Analysis of interactions between the epigenome and structural mutability of the genome using Genboree workbench tools. - Cristian Coarfa; Christina Pichot; Andrew R. Jackson; Arpit Tandon; Viren Amin; Sriram Raghuraman; Sameer Paithankar; Adrian V. Lee; Sean E. McGuire; Aleksandar Milosavljevic (BMC Bioinform., 2014)

The center for causal discovery of biomedical knowledge from big data. - Gregory F. Cooper; Ivet Bahar; Michael J. Becich; Panayiotis V. Benos; Jeremy M. Berg; Jeremy U. Espino; Clark Glymour; Rebecca Crowley Jacobson; Michelle Kienholz; Adrian V. Lee; Xinghua Lu 001; Richard Scheines (J. Am. Medical Informatics Assoc., 2015)

Spatial Statistics for Segmenting Histological Structures in H&E Stained Tissue Images. - Luong Nguyen; Akif Burak Tosun; Jeffrey L. Fine; Adrian V. Lee; D. Lansing Taylor; S. Chakra Chennubhotla (IEEE Trans. Medical Imaging, 2017)

Phylogenies Derived from Matched Transcriptome Reveal the Evolution of Cell Populations and Temporal Order of Perturbed Pathways in Breast Cancer Brain Metastases. - Yifeng Tao; Haoyun Lei; Adrian V. Lee; Jian Ma 004; Russell Schwartz (ISMCO, 2019)

Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference. - Chunhui Cai; Gregory F. Cooper; Kevin N. Lu; Xiaojun Ma; Shuping Xu; Zhenlong Zhao; Xueer Chen; Yifan Xue; Adrian V. Lee; Nathan Clark; Vicky Chen; Songjian Lu; et al. (PLoS Comput. Biol., 2019)

Network-guided prediction of aromatase inhibitor response in breast cancer. - Matthew Ruffalo; Roby Thomas; Jian Chen; Adrian V. Lee; Steffi Oesterreich; Ziv Bar-Joseph (PLoS Comput. Biol., 2019)

Molecular Biology Information Service: an innovative medical library-based bioinformatics support service for biomedical researchers. - Ansuman Chattopadhyay; Carrie L. Iwema; Barbara A Epstein; Adrian V. Lee; Arthur S. Levine (Briefings Bioinform., 2020)

Robust and accurate deconvolution of tumor populations uncovers evolutionary mechanisms of breast cancer metastasis. - Yifeng Tao; Haoyun Lei; Xuecong Fu; Adrian V. Lee; Jian Ma 004; Russell Schwartz (Bioinform., 2020)

Inhibition of RPS6K reveals context-dependent Akt activity in luminal breast cancer cells. - Cemal Erdem; Adrian V. Lee; D. Lansing Taylor; Timothy R. Lezon (PLoS Comput. Biol., 2021)

Semi-deconvolution of bulk and single-cell RNA-seq data with application to metastatic progression in breast cancer. - Haoyun Lei; Xiaoyan A. Guo; Yifeng Tao; Kai Ding; Xuecong Fu; Steffi Oesterreich; Adrian V. Lee; Russell Schwartz (Bioinform., 2022)

Systems approach for congruence and selection of cancer models towards precision medicine. - Jian Zou; Osama Shah; Yu-Chiao Chiu; Tianzhou Ma; Jennifer M. Atkinson; Steffi Oesterreich; Adrian V. Lee; George C. Tseng (PLoS Comput. Biol., 2024)

iGenSig-Rx: an integral genomic signature based white-box tool for modeling cancer therapeutic responses using multi-omics data. - Sanghoon Lee; Min Sun; Yiheng Hu; Yue Wang; Md N. Islam; David Goerlitz; Peter C. Lucas; Adrian V. Lee; Sandra M. Swain; Gong Tang; Xiao-Song Wang 004 (BMC Bioinform., 2024)