Parallel Discovery of Transcription Factor Binding Sites. - Adrianto Wirawan; Bertil Schmidt (APCCAS, 2006)

Parallel DNA Sequence Alignment on the Cell Broadband Engine. - Adrianto Wirawan; Chee Keong Kwoh 001; Bertil Schmidt (PPAM, 2007)

CBESW: Sequence Alignment on the Playstation 3. - Adrianto Wirawan; Chee Keong Kwoh 001; Nim Tri Hieu; Bertil Schmidt (BMC Bioinform., 2008)

Pairwise Distance Matrix Computation for Multiple Sequence Alignment on the Cell Broadband Engine. - Adrianto Wirawan; Bertil Schmidt; Chee Keong Kwoh 001 (ICCS (1), 2009)

High performance protein sequence database scanning on the Cell Broadband Engine. - Adrianto Wirawan; Bertil Schmidt; Huiliang Zhang; Chee Keong Kwoh 001 (Sci. Program., 2009)

INVERTER: INtegrated Variable numbER Tandem rEpeat findeR. - Adrianto Wirawan; Chee Keong Kwoh 001; Li Yang Hsu; Tse Hsien Koh (CSBio, 2010)

Multi-threaded vectorized distance matrix computation on the CELL/BE and x86/SSE2 architectures. - Adrianto Wirawan; Chee Keong Kwoh 001; Bertil Schmidt (Bioinform., 2010)

Heterogeneous multi-core systems for bioinformatics - Adrianto Wirawan (2010)

MRMR optimized classification for automatic glaucoma diagnosis. - Zhuo Zhang 001; Chee Keong Kwoh 001; Jiang Liu 001; Fengshou Yin; Adrianto Wirawan; Carol Yim-lui Cheung; Mani Baskaran; Tin Aung; Tien Yin Wong (EMBC, 2011)

Review of tandem repeat search tools: a systematic approach to evaluating algorithmic performance. - Kian Guan Lim; Chee Keong Kwoh 001; Li Yang Hsu; Adrianto Wirawan (Briefings Bioinform., 2013)

CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions. - Yongchao Liu; Adrianto Wirawan; Bertil Schmidt (BMC Bioinform., 2013)

HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing data. - Adrianto Wirawan; Robert S. Harris; Yongchao Liu; Bertil Schmidt; Jan Schröder (BMC Bioinform., 2014)

CLOVE: classification of genomic fusions into structural variation events. - Jan Schröder; Adrianto Wirawan; Bertil Schmidt; Anthony T. Papenfuss (BMC Bioinform., 2017)