StochDecomp - Matlab package for noise decomposition in stochastic biochemical systems. - Tomasz Jetka; Agata Charzynska; Anna Gambin; Michael P. H. Stumpf; Michal Komorowski (Bioinform., 2014)

Computational modeling of sphingolipid metabolism. - Weronika Wronowska; Agata Charzynska; Karol Nienaltowski; Anna Gambin (BMC Syst. Biol., 2015)

Improvement of the k-nn Entropy Estimator with Applications in Systems Biology. - Agata Charzynska; Anna Gambin (Entropy, 2016)