Malleable Machines in Transcription Regulation: The Mediator Complex. - Ágnes Tóth-Petróczy; Christopher J. Oldfield; István Simon; Yuichiro Takagi; A. Keith Dunker; Vladimir N. Uversky; Mónika Fuxreiter (PLoS Comput. Biol., 2008)

Systematic Mapping of Protein Mutational Space by Prolonged Drift Reveals the Deleterious Effects of Seemingly Neutral Mutations. - Liat Rockah-Shmuel; Ágnes Tóth-Petróczy; Dan S. Tawfik (PLoS Comput. Biol., 2015)

The EVcouplings Python framework for coevolutionary sequence analysis. - Thomas A. Hopf; Anna G. Green; Benjamin Schubert; Sophia Mersmann; Charlotta Schärfe; John Ingraham; Ágnes Tóth-Petróczy; Kelly Brock; Adam J. Riesselman; Perry Palmedo; Chan Kang; Robert P. Sheridan; et al. (Bioinform., 2019)

novoCaller: a Bayesian network approach for de novo variant calling from pedigree and population sequence data. - Anwoy Kumar Mohanty; Dana Vuzman; Laurent C. Francioli; Christopher Cassa; Ágnes Tóth-Petróczy; Shamil R. Sunyaev (Bioinform., 2019)

deTELpy: Python package for high-throughput detection of amino acid substitutions in mass spectrometry datasets. - Cedric Landerer; Maxim Scheremetjew; HongKee Moon; Lena Hersemann; Ágnes Tóth-Petróczy (Bioinform., 2024)