A concurrent implementation of the simulated annealing by the method of multiple trials. - Agnieszka Debudaj-Grabysz (Informatica (Slovenia), 2002)

A Concurrent Implementation of Simulated Annealing and its Application to the VRPTW Optimization Problem. - Agnieszka Debudaj-Grabysz; Zbigniew J. Czech (DAPSYS, 2004)

Nesting OpenMP in MPI to Implement a Hybrid Communication Method of Parallel Simulated Annealing on a Cluster of SMP Nodes. - Agnieszka Debudaj-Grabysz; Rolf Rabenseifner (PVM/MPI, 2005)

Load Balanced Parallel Simulated Annealing on a Cluster of SMP Nodes. - Agnieszka Debudaj-Grabysz; Rolf Rabenseifner (Euro-Par, 2006)

Theoretical and Practical Issues of Parallel Simulated Annealing. - Agnieszka Debudaj-Grabysz; Zbigniew J. Czech (PPAM, 2007)

Kalign-LCS - A More Accurate and Faster Variant of Kalign2 Algorithm for the Multiple Sequence Alignment Problem. - Sebastian Deorowicz; Agnieszka Debudaj-Grabysz; Adam Gudys (ICMMI, 2013)

Disk-based k-mer counting on a PC. - Sebastian Deorowicz; Agnieszka Debudaj-Grabysz; Szymon Grabowski (BMC Bioinform., 2013)

KMC 2: Fast and resource-frugal k-mer counting. - Sebastian Deorowicz; Marek Kokot; Szymon Grabowski; Agnieszka Debudaj-Grabysz (CoRR, 2014)

KMC 2: fast and resource-frugal k-mer counting. - Sebastian Deorowicz; Marek Kokot; Szymon Grabowski; Agnieszka Debudaj-Grabysz (Bioinform., 2015)

Aligning 415 519 proteins in less than two hours on PC. - Sebastian Deorowicz; Agnieszka Debudaj-Grabysz; Adam Gudys (CoRR, 2016)

Sorting Data on Ultra-Large Scale with RADULS - New Incarnation of Radix Sort. - Marek Kokot; Sebastian Deorowicz; Agnieszka Debudaj-Grabysz (BDAS, 2017)

Whisper: read sorting allows robust mapping of DNA sequencing data. - Sebastian Deorowicz; Agnieszka Debudaj-Grabysz; Adam Gudys; Szymon Grabowski (Bioinform., 2019)

CoMSA: compression of protein multiple sequence alignment files. - Sebastian Deorowicz; Joanna Walczyszyn; Agnieszka Debudaj-Grabysz (Bioinform., 2019)