Bootstrapping Algorithms for Gene Duplication and Speciation Events. - Agnieszka Mykowiecka 002; Pawel Górecki 001 (AlCoB, 2016)

Mean Values of Gene Duplication and Loss Cost Functions. - Pawel Górecki 001; Jaroslaw Paszek; Agnieszka Mykowiecka 002 (ISBRA, 2016)

Phylogenetic Tree Reconciliation: Mean Values for Fixed Gene Trees. - Pawel Górecki 001; Alexey Markin; Agnieszka Mykowiecka 002; Jaroslaw Paszek; Oliver Eulenstein (ISBRA, 2017)

Inferring time-consistent and well-supported horizontal gene transfers. - Agnieszka Mykowiecka 002; Anna Muszewska; Pawel Górecki 001 (BIBM, 2018)

Inferring Gene-Species Assignments in the Presence of Horizontal Gene Transfer. - Agnieszka Mykowiecka 002; Pawel Szczesny; Pawel Górecki 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Mathematical properties of the gene duplication cost. - Pawel Górecki 001; Agnieszka Mykowiecka 002; Jaroslaw Paszek; Oliver Eulenstein (Discret. Appl. Math., 2019)

Credibility of Evolutionary Events in Gene Trees. - Agnieszka Mykowiecka 002; Pawel Górecki 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Conflict Resolution Algorithms for Deep Coalescence Phylogenetic Networks. - Marcin Wawerka; Dawid Dabkowski; Natalia Rutecka; Agnieszka Mykowiecka 002; Pawel Górecki 001 (WABI, 2021)

Embedding gene trees into phylogenetic networks by conflict resolution algorithms. - Marcin Wawerka; Dawid Dabkowski; Natalia Rutecka; Agnieszka Mykowiecka 002; Pawel Górecki 001 (Algorithms Mol. Biol., 2022)

Simultaneous Reconstruction of Duplication Episodes and Gene-Species Mappings. - Pawel Górecki 001; Natalia Rutecka; Agnieszka Mykowiecka 002; Jaroslaw Paszek (WABI, 2023)

Robinson-Foulds distance between phylogenetic networks and gene trees. - Natalia Rutecka; Agnieszka Mykowiecka 002; Jaroslaw Paszek; Pawel Górecki 001 (BCB, 2024)

Unifying duplication episode clustering and gene-species mapping inference. - Pawel Górecki 001; Natalia Rutecka; Agnieszka Mykowiecka 002; Jaroslaw Paszek (Algorithms Mol. Biol., 2024)