RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12. - Heladia Salgado; Socorro Gama-Castro; Agustino Martínez-Antonio; Edgar Díaz-Peredo; Fabiola Sánchez-Solano; Martín Peralta-Gil; Delfino Garcia-Alonso; Verónica Jiménez-Jacinto; Alberto Santos-Zavaleta; César Bonavides-Martínez; Julio Collado-Vides (Nucleic Acids Res., 2004)

The comprehensive updated regulatory network of Escherichia coli K-12. - Heladia Salgado; Alberto Santos-Zavaleta; Socorro Gama-Castro; Martín Peralta-Gil; Mónica I. Peñaloza-Spínola; Agustino Martínez-Antonio; Peter D. Karp; Julio Collado-Vides (BMC Bioinform., 2006)

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions. - Heladia Salgado; Socorro Gama-Castro; Martín Peralta-Gil; Edgar Díaz-Peredo; Fabiola Sánchez-Solano; Alberto Santos-Zavaleta; Irma Martínez-Flores; Verónica Jiménez-Jacinto; César Bonavides-Martínez; Juan Segura-Salazar; Agustino Martínez-Antonio; Julio Collado-Vides (Nucleic Acids Res., 2006)

RegulomePA: a database of transcriptional regulatory interactions in Pseudomonas aeruginosa PAO1. - Edgardo Galán-Vásquez; Beatriz Carely Luna-Olivera; Marcelino Ramírez-Ibáñez; Agustino Martínez-Antonio (Database J. Biol. Databases Curation, 2020)

Qualitative Perturbation Analysis and Machine Learning: Elucidating Bacterial Optimization of Tryptophan Production. - Miguel Angel Ramos-Valdovinos; Prisciluis Caheri Salas-Navarrete; Gerardo R. Amores; Ana Lilia Hernández-Orihuela; Agustino Martínez-Antonio (Algorithms, 2024)