A review on deep learning applications in highly multiplexed tissue imaging data analysis. - Mohammed Zidane; Ahmad Makky; Matthias Bruhns; Alexander Rochwarger; Sepideh Babaei; Manfred Claassen; Christian M. Schürch (Frontiers Bioinform., 2023)

Corrigendum: A review on deep learning applications in highly multiplexed tissue imaging data analysis. - Mohammed Zidane; Ahmad Makky; Matthias Bruhns; Alexander Rochwarger; Sepideh Babaei; Manfred Claassen; Christian M. Schürch (Frontiers Bioinform., 2023)

S3-CIMA: Supervised spatial single-cell image analysis for identifying disease-associated cell-type compositions in tissue. - Sepideh Babaei; Jonathan Christ; Vivek Sehra; Ahmad Makky; Mohammed Zidane; Kilian Wistuba-Hamprecht; Christian M. Schürch; Manfred Claassen (Patterns, 2023)

A Foundation Model for Spatial Proteomics. - Muhammad Shaban; Yuzhou Chang; Huaying Qiu; Yao Yu Yeo; Andrew H. Song; Guillaume Jaume; Yuchen Wang; Luca L. Weishaupt; Tong Ding; Anurag Vaidya; Abdallah Lamane; Daniel Shao; et al. (CoRR, 2025)