Collaborative Cognitive Assistants for Advanced Persistent Threat Detection. - Steven Meckl; Gheorghe Tecuci; Dorin Marcu; Mihai Boicu; Ahmed Bin Zaman (AAAI Fall Symposia, 2017)

Decoy Ensemble Reduction in Template-free Protein Structure Prediction. - Ahmed Bin Zaman; Parastoo Kamranfar; Carlotta Domeniconi; Amarda Shehu (BCB, 2019)

Using Sequence-Predicted Contacts to Guide Template-free Protein Structure Prediction. - Ahmed Bin Zaman; Prasanna Venkatesh Parthasarathy; Amarda Shehu (BCB, 2019)

Using subpopulation EAs to map molecular structure landscapes. - Ahmed Bin Zaman; Kenneth A. De Jong; Amarda Shehu (GECCO, 2019)

Balancing multiple objectives in conformation sampling to control decoy diversity in template-free protein structure prediction. - Ahmed Bin Zaman; Amarda Shehu (BMC Bioinform., 2019)

Building maps of protein structure spaces in template-free protein structure prediction. - Ahmed Bin Zaman; Amarda Shehu (J. Bioinform. Comput. Biol., 2019)

Protein Decoy Generation via Adaptive Stochastic Optimization for Protein Structure Determination. - Ahmed Bin Zaman; Toki Tahmid Inan; Amarda Shehu (BIBM, 2020)

Protein Tertiary Structures Zaman_Molecules20. - Ahmed Bin Zaman; Parastoo Kamranfar; Carlotta Domeniconi; Amarda Shehu (IEEE DataPort, 2020)

Adaptive Conformation Sampling Dataset Zaman_TCBB21. - Ahmed Bin Zaman; Toki Tahmid Inan; Kenneth A. De Jong; Amarda Shehu (IEEE DataPort, 2021)

Adaptive Stochastic Optimization to Improve Protein Conformation Sampling. - Ahmed Bin Zaman; Toki Tahmid Inan; Kenneth A. De Jong; Amarda Shehu (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)