An Algorithm for Multiple and Global Alignments. - Mourad Elloumi; Ahmed Mokaddem (BIRD, 2008)

PAAA: A Progressive Iterative Alignment Algorithm Based on Anchors. - Ahmed Mokaddem; Mourad Elloumi (PRIB, 2011)

New Distances for Improving Progressive Alignment Algorithm. - Ahmed Mokaddem; Mourad Elloumi (ACITY (2), 2012)

A New Progressive Multiple Sequence Alignment Algorithm. - Soumaya Hosni; Ahmed Mokaddem; Mourad Elloumi (DEXA Workshops, 2012)

Motalign: A Multiple Sequence Alignment Algorithm Based on a New Distance and a New Score Function. - Ahmed Mokaddem; Mourad Elloumi (DEXA Workshops, 2013)

Pro-malign: Multiple Sequence Alignment Algorithm using Approached Profile. - Ahmed Mokaddem; Amine Bel Haj; Mourad Elloumi (J. Softw., 2018)

Refin-Align: New Refinement Algorithm For Multiple Sequence Alignment. - Ahmed Mokaddem; Amine Belhadi; Mourad Elloumi (Informatica (Slovenia), 2019)