GT-Scan: identifying unique genomic targets. - Aidan O'Brien; Timothy L. Bailey (Bioinform., 2014)

Breaking the Curse of Dimensionality for Machine Learning on Genomic Data. - Aidan O'Brien; Piotr Szul; Oscar Luo; Andrew George; Robert Dunne; Denis C. Bauer (BAI@IJCAI, 2017)

Artificial Intelligence and Machine Learning in Bioinformatics. - Kaitao Lai; Natalie Twine; Aidan O'Brien; Yi Guo; Denis C. Bauer (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

Inferred expression regulator activities suggest genes mediating cardiometabolic genetic signals. - Jason W. Hoskins; Charles C. Chung; Aidan O'Brien; Jun Zhong; Katelyn Connelly; Irene Collins; Jianxin Shi; Laufey T. Amundadottir (PLoS Comput. Biol., 2021)