RBPSponge: genome-wide identification of lncRNAs that sponge RBPs. - Saber HafezQorani; Aissa Houdjedj; Mehmet Arici; Abdesselam Said; Hilal Kazan (Bioinform., 2019)

Ranking cancer drivers via betweenness-based outlier detection and random walks. - Cesim Erten; Aissa Houdjedj; Hilal Kazan (BMC Bioinform., 2021)

PersonaDrive: a method for the identification and prioritization of personalized cancer drivers. - Cesim Erten; Aissa Houdjedj; Hilal Kazan; Ahmed Amine Taleb Bahmed (Bioinform., 2022)

SCITUNA: single-cell data integration tool using network alignment. - Aissa Houdjedj; Yacine Marouf; Mekan Myradov; Süleyman Onur Dogan; Burak Onur Erten; Oznur Tastan; Cesim Erten; Hilal Kazan (BMC Bioinform., 2025)