Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets. - Aitor Blanco-Míguez; Jan P. Meier-Kolthoff; Alberto Gutiérrez-Jácome; Markus Göker; Florentino Fdez-Riverola; Borja Sánchez; Anália Lourenço (PLoS Comput. Biol., 2016)

MAHMI database: a comprehensive MetaHit-based resource for the study of the mechanism of action of the human microbiota. - Aitor Blanco-Míguez; Alberto Gutiérrez-Jácome; Florentino Fdez-Riverola; Anália Lourenço; Borja Sánchez (Database J. Biol. Databases Curation, 2017)

P4P: a peptidome-based strain-level genome comparison web tool. - Aitor Blanco-Míguez; Florentino Fdez-Riverola; Anália Lourenço; Borja Sánchez (Nucleic Acids Res., 2017)

Resources and tools for the high-throughput, multi-omic study of intestinal microbiota. - Aitor Blanco-Míguez; Florentino Fdez-Riverola; Borja Sánchez; Anália Lourenço (Briefings Bioinform., 2019)

DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research. - Hugo López-Fernández; Aitor Blanco-Míguez; Florentino Fdez-Riverola; Borja Sánchez; Anália Lourenço (Comput. Biol. Medicine, 2019)

Computational prediction of the bioactivity potential of proteomes based on expert knowledge. - Aitor Blanco-Míguez; Guillermo Blanco; Alberto Gutiérrez-Jácome; Florentino Fdez-Riverola; Borja Sánchez; Anália Lourenço (J. Biomed. Informatics, 2019)

Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm. - Martín Pérez-Pérez; Gael Pérez Rodríguez; Aitor Blanco-Míguez; Florentino Fdez-Riverola; Alfonso Valencia; Martin Krallinger; Anália Lourenço (J. Cheminformatics, 2019)

Discovering and exploring the hidden diversity of the human gut viruses using highly enriched virome samples. - Moreno Zolfo; Andrea Silverj; Aitor Blanco-Míguez; Paolo Manghi; Omar Rota Stabelli; Vitor Heidrich; Jordan Jensen; Sagun Maharjan; Eric A. Franzosa; Cristina Menni; Alessia Visconti; Federica Pinto; et al. (Zenodo, 2024)