Systematic and automated discovery of patterns in PROSITE families. - Reece Hart; Ajay K. Royyuru; Gustavo Stolovitzky; Andrea Califano (RECOMB, 2000)

Systematic and Fully Automated Identification of Protein Sequence Patterns. - Reece Hart; Ajay K. Royyuru; Gustavo Stolovitzky; Andrea Califano (J. Comput. Biol., 2000)

Blue Gene: A vision for protein science using a petaflop supercomputer. - Frances E. Allen; George S. Almási; Wanda Andreoni; Daniel K. Beece; Bruce J. Berne; Arthur A. Bright; José R. Brunheroto; Calin Cascaval; José G. Castaños; Paul Coteus; Paul Crumley; Alessandro Curioni; et al. (IBM Syst. J., 2001)

Preface. - George L.-T. Chiu; Manish Gupta 002; Ajay K. Royyuru (IBM J. Res. Dev., 2005)

Deep computing in biology: challenges and progress. - Ajay K. Royyuru (PACT, 2006)

Inferring Common Origins from mtDNA. - Ajay K. Royyuru; Gabriela Alexe; Daniel E. Platt; Ravi Vijaya Satya; Laxmi Parida; Saharon Rosset; Gyan Bhanot (RECOMB, 2006)

Magnitude and spatial orientation of the hydrophobic moments of multi-domain proteins. - Ruhong Zhou; Ajay K. Royyuru; Prasanna Athma; Frank Suits; B. David Silverman (Int. J. Bioinform. Res. Appl., 2006)

Massively parallel molecular dynamics simulations of lysozyme unfolding. - Ruhong Zhou; Maria Eleftheriou; Chung-Chau Hon; Robert S. Germain; Ajay K. Royyuru; Bruce J. Berne (IBM J. Res. Dev., 2008)

Free energy simulations reveal a double mutant avian H5N1 virus hemagglutinin with altered receptor binding specificity. - Payel Das; Jingyuan Li 001; Ajay K. Royyuru; Ruhong Zhou (J. Comput. Chem., 2009)

Modeling mutations of influenza virus with IBM Blue Gene. - Zhen Xia; Payel Das; Tien Huynh; Ajay K. Royyuru; Ruhong Zhou (IBM J. Res. Dev., 2011)

Industrial methodology for process verification in research (IMPROVER): toward systems biology verification. - Pablo Meyer 001; Julia Hoeng; John Jeremy Rice; Raquel Norel; Jörg Sprengel; Katrin Stolle; Thomas Bonk; Stephanie Corthesy; Ajay K. Royyuru; Manuel C. Peitsch; Gustavo Stolovitzky (Bioinform., 2012)

HiCOMB 2019 Keynote Speaker. - Ajay K. Royyuru (IPDPS Workshops, 2019)