A generalization of the mutual fund theorem. - Ajay Khanna; Martin Kulldorff (Finance Stochastics, 1999)

Rfam: an RNA family database. - Sam Griffiths-Jones; Alex Bateman; Mhairi Marshall; Ajay Khanna; Sean R. Eddy (Nucleic Acids Res., 2003)

The Pfam protein families database. - Alex Bateman; Lachlan James M. Coin; Richard Durbin; Robert D. Finn; Volker Hollich; Sam Griffiths-Jones; Ajay Khanna; Mhairi Marshall; Simon Moxon; Erik L. L. Sonnhammer; David J. Studholme; Corin Yeats; et al. (Nucleic Acids Res., 2004)

Rfam: annotating non-coding RNAs in complete genomes. - Sam Griffiths-Jones; Simon Moxon; Mhairi Marshall; Ajay Khanna; Sean R. Eddy; Alex Bateman (Nucleic Acids Res., 2005)

Pfam: clans, web tools and services. - Robert D. Finn; Jaina Mistry; Benjamin Schuster-Böckler; Sam Griffiths-Jones; Volker Hollich; Timo Lassmann; Simon Moxon; Mhairi Marshall; Ajay Khanna; Richard Durbin; Sean R. Eddy; Erik L. L. Sonnhammer; et al. (Nucleic Acids Res., 2006)

Bam-readcount - rapid generation of basepair-resolution sequence metrics. - Ajay Khanna; David E. Larson; Srivatsan Sridhar; Matthew Mosior; Travis E. Abbott; Susanna Kiwala; Timothy J. Ley; Eric J. Duncavage; Matthew J. Walter; Jason R. Walker; Obi L. Griffith; Malachi Griffith; et al. (J. Open Source Softw., 2022)