From secondary structure to three-dimensional structure: Improved dihedral angle probability distribution function for use with energy searches for native structures of polypeptides and proteins. - Betty Cheng; Akbar Nayeem; Harold A. Scheraga (J. Comput. Chem., 1996)

Closing the side-chain gap in protein loop modeling. - Karen A. Rossi; Akbar Nayeem; Carolyn A. Weigelt; Stanley R. Krystek (J. Comput. Aided Mol. Des., 2009)