Tree Adjoining Grammars for RNA Structure Prediction. - Yasuo Uemura; Aki Hasegawa; Satoshi Kobayashi; Takashi Yokomori (Theor. Comput. Sci., 1999)

Software-Aided Mass Spectrometry Analysis for Identification of Protein-Protein Interaction in Signal Transduction Pathways. - Aki Hasegawa; Kazumi Kuriyama-Matsumura; Xiaomei Yu; Mariko Hatakeyama; Akihiko Konagaya (ICDE Workshops, 2005)

Petascale molecular dynamics simulation using the fast multipole method on K computer. - Yousuke Ohno; Rio Yokota; Hiroshi Koyama; Gentaro Morimoto; Aki Hasegawa; Gen Masumoto; Noriaki Okimoto; Yoshinori Hirano; Huda Ibeid; Tetsu Narumi; Makoto Taiji (Comput. Phys. Commun., 2014)

Differential Privacy under Incalculable Sensitivity. - Tomoaki Mimoto; Masayuki Hashimoto; Hiroyuki Yokoyama; Toru Nakamura; Takamasa Isohara; Ryosuke Kojima; Aki Hasegawa; Yasushi Okuno (CSP, 2022)

Privacy-Preserving Correlation Coefficient. - Tomoaki Mimoto; Hiroyuki Yokoyama; Toru Nakamura; Takamasa Isohara; Masayuki Hashimoto; Ryosuke Kojima; Aki Hasegawa; Yasushi Okuno (IEICE Trans. Inf. Syst., 2023)

kMoL: an open-source machine and federated learning library for drug discovery. - Romeo Cozac; Haris Hasic; Jun Jin Choong; Vincent Richard; Loic Beheshti; Cyrille Froehlich; Takuto Koyama; Shigeyuki Matsumoto; Ryosuke Kojima; Hiroaki Iwata; Aki Hasegawa; Takao Otsuka; et al. (J. Cheminformatics, 2025)