New AMBER force field parameters of heme iron for cytochrome P450s determined by quantum chemical calculations of simplified models. - Akifumi Oda; Noriyuki Yamaotsu; Shuichi Hirono (J. Comput. Chem., 2005)

Comparison of Consensus Scoring Strategies for Evaluating Computational Models of Protein-Ligand Complexes. - Akifumi Oda; Keiichi Tsuchida; Tadakazu Takakura; Noriyuki Yamaotsu; Shuichi Hirono (J. Chem. Inf. Model., 2006)

Evaluation of the searching abilities of HBOP and HBSITE for binding pocket detection. - Akifumi Oda; Noriyuki Yamaotsu; Shuichi Hirono (J. Comput. Chem., 2009)