RNA secondary structure prediction using highly parallel computers. - Akihiro Nakaya; Kenji Yamamoto; Akinori Yonezawa (Comput. Appl. Biosci., 1995)

Visualization of RNA secondary structures using highly parallel computers. - Akihiro Nakaya; Kenjiro Taura; Kenji Yamamoto; Akinori Yonezawa (Comput. Appl. Biosci., 1996)

Weighted Majority Decision among Several Region Rules for Scientific Discovery. - Akihiro Nakaya; Hideharu Furukawa; Shinichi Morishita (Discovery Science, 1999)

Weighted Majority Decision among Region Rules for a Categorical Dataset. - Akihiro Nakaya; Shinichi Morishita (Discovery Science, 1999)

Parallel Branch-and-Bound Graph Search for Correlated Association Rules. - Shinichi Morishita; Akihiro Nakaya (Large-Scale Parallel Data Mining, 1999)

The KEGG databases at GenomeNet. - Minoru Kanehisa; Susumu Goto; Shuichi Kawashima; Akihiro Nakaya (Nucleic Acids Res., 2002)

Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis. - Yoshihiro Yamanishi; Jean-Philippe Vert; Akihiro Nakaya; Minoru Kanehisa (ISMB (Supplement of Bioinformatics), 2003)

KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters. - Akihiro Nakaya; Toshiaki Katayama; Masumi Itoh; Kazushi Hiranuka; Shuichi Kawashima; Yuki Moriya; Shujiro Okuda; Michihiro Tanaka; Toshiaki Tokimatsu; Yoshihiro Yamanishi; Akiyasu C. Yoshizawa; Minoru Kanehisa; et al. (Nucleic Acids Res., 2013)