Stepwise Generation of Hamiltonian Path with Molecules. - Nobuhiko Morimoto; Masanori Arita; Akira Suyama (BCEC, 1997)

Solid phase DNA solution to the Hamiltonian path problem. - Nobuhiko Morimoto; Masanori Arita; Akira Suyama (DNA Based Computers, 1997)

Joining and rotating data with molecules. - Masanori Arita; Masami Hagiya; Akira Suyama (ICEC, 1997)

Solution to 3-SAT by breadth first search. - Hiroshi Yoshida; Akira Suyama (DNA Based Computers, 1999)

PNA-mediated Whiplash PCR. - John A. Rose; Russell J. Deaton; Masami Hagiya; Akira Suyama (DNA, 2001)

The Fidelity of the Tag-Antitag System. - John A. Rose; Russell J. Deaton; Masami Hagiya; Akira Suyama (DNA, 2001)

A PNA-mediated Whiplash PCR-based Program for In Vitro Protein Evolution. - John A. Rose; Mitsunori Takano; Akira Suyama (DNA, 2002)

The fidelity of the tag-antitag system II: reconciliation with the stringency picture. - John A. Rose; Masami Hagiya; Akira Suyama (IEEE Congress on Evolutionary Computation, 2003)

Autonomous Biomolecular Computer Modeled after Retroviral Replication. - Nao Nitta; Akira Suyama (DNA, 2003)

Parallel Translation of DNA Clusters by VCSEL Array Trapping and Temperature Control with Laser Illumination. - Yusuke Ogura; Takashi Kawakami; Fumika Sumiyama; Akira Suyama; Jun Tanida (DNA, 2003)

A DNA Computing-based Genetic Program for In Vitro Protein Evolution via Constrained Pseudomodule Shuffling. - John A. Rose; Mitsunori Takano; Masami Hagiya; Akira Suyama (Genet. Program. Evolvable Mach., 2003)

Methods for Manipulating DNA Molecules in a Micrometer Scale Using Optical Techniques. - Yusuke Ogura; Takashi Kawakami; Fumika Sumiyama; Satoru Irie; Akira Suyama; Jun Tanida (DNA, 2004)

Statistical thermodynamic analysis and designof DNA-based computers. - John A. Rose; Russell J. Deaton; Akira Suyama (Nat. Comput., 2004)

Physical modeling of biomolecular computers: Models, limitations, and experimental validation. - John A. Rose; Akira Suyama (Nat. Comput., 2004)

Control of DNA Molecules on a Microscopic Bead Using Optical Techniques for Photonic DNA Memory. - Yusuke Ogura; Taro Beppu; Masahiro Takinoue; Akira Suyama; Jun Tanida (DNA, 2005)

Experimental Validation of the Statistical Thermodynamic Model for Prediction of the Behavior of Autonomous Molecular Computers Based on DNA Hairpin Formation. - Ken Komiya; Satsuki Yaegashi; Masami Hagiya; Akira Suyama; John A. Rose (DNA, 2006)

Probabilistic Inference in Test Tube and its Application to Gene Expression Profiles. - Yasubumi Sakakibara; Takashi Yokomori; Satoshi Kobayashi; Akira Suyama (Formal Models, Languages and Applications, 2007)

An improved readout method of molecular computation based on real-time PCR implemented on DNA Engine Opticon 2 System. - Zuwairie Ibrahim; Muhammad Faiz Mohamed Saaid; Ali S. Paramita; Akira Suyama; John A. Rose (IEEE Congress on Evolutionary Computation, 2007)

Design of Code Words for DNA Computers and Nanostructures with Consideration of Hybridization Kinetics. - Tetsuro Kitajima; Masahiro Takinoue; Ko-ichiroh Shohda; Akira Suyama (DNA, 2007)

Design and Numerical Analysis of RNA Oscillator. - Masahiro Takinoue; Daisuke Kiga; Ko-ichiroh Shohda; Akira Suyama (IWNC, 2007)

Experimental implementation and analysis of a DNA computing readout method based on real-time PCR with TaqMan probes. - Zuwairie Ibrahim; John A. Rose; Akira Suyama; Marzuki Khalid (Nat. Comput., 2008)

Construction of AND Gate for RTRACS with the Capacity of Extension to NAND Gate. - Yoko Sakai; Yoriko Mawatari; Kiyonari Yamasaki; Ko-ichiroh Shohda; Akira Suyama (DNA, 2009)

RNA Oscillator: Limit Cycle Oscillations based on Artificial Biomolecular Reactions. - Masahiro Takinoue; Daisuke Kiga; Ko-ichiroh Shohda; Akira Suyama (New Gener. Comput., 2009)

A DNA Based Molecular Logic Gate Capable of a Variety of Logical Operations. - Anton Kan; Ko-ichiroh Shohda; Akira Suyama (DNA, 2012)

A DNA based molecular logic gate capable of a variety of logical operations. - Anton Kan; Yoko Sakai; Ko-ichiroh Shohda; Akira Suyama (Nat. Comput., 2014)

Using geofencing for a disaster information system. - Akira Suyama; Ushio Inoue (ICIS, 2016)

Importance of Sequence Design Methods Considering Hybridization Kinetics for in vivo DNA Computers. - Toshihiro Kojima; Akira Suyama (BIOSIGNALS, 2017)

Counting Substrate Cycles in Topologically Restricted Metabolic Networks. - Robert D. Barish; Akira Suyama (CiE, 2017)

Barnette's Conjecture Through the Lens of the ModkP Complexity Classes. - Robert D. Barish; Akira Suyama (JCDCGGG, 2018)

Counting Hamiltonian Cycles on Quartic 4-Vertex-Connected Planar Graphs. - Robert D. Barish; Akira Suyama (Graphs Comb., 2020)

Randomized Reductions and the Topology of Conjectured Classes of Uniquely Hamiltonian Graphs. - Robert D. Barish; Akira Suyama (J. Inf. Process., 2020)