From Microscopy Data to in silico Environments for in vivo Oriented Simulations. - Noriko Hiroi; Michael Klann; Keisuke Iba; Pablo de Heras Ciechomski; Shuji Yamashita; Akito Tabira; Takahiro Okuhara; Takeshi Kubojima; Yasunori Okada; Kotaro Oka; Robin Mange; Michael Unger; et al. (EURASIP J. Bioinform. Syst. Biol., 2012)

In vivo oriented modeling with consideration of intracellular crowding. - Noriko Hiroi; Keisuke Iba; Akito Tabira; Takahiro Okuhara; Takeshi Kubojima; Takumi Hiraiwa; Tetsuya J. Kobayashi; Kotaro Oka; Akira Funahashi (EMBC, 2013)

LibSBMLSim: a reference implementation of fully functional SBML simulator. - Hiromu Takizawa; Kazushige Nakamura; Akito Tabira; Yoichi Chikahara; Tatsuhiro Matsui; Noriko Hiroi; Akira Funahashi (Bioinform., 2013)

The systems biology simulation core algorithm. - Roland Keller; Alexander Dörr; Akito Tabira; Akira Funahashi; Michael J. Ziller; Richard R. Adams; Nicolas Rodriguez 001; Nicolas Le Novère; Noriko Hiroi; Hannes Planatscher; Andreas Zell; Andreas Dräger (BMC Syst. Biol., 2013)