Adplot: detection and visualization of repetitive patterns in complete genomes. - Akito Taneda (Bioinform., 2004)

Cofolga: a genetic algorithm for finding the common folding of two RNAs. - Akito Taneda (Comput. Biol. Chem., 2005)

An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeast. - Akito Taneda (BMC Bioinform., 2008)

Multi-objective pairwise RNA sequence alignment. - Akito Taneda (Bioinform., 2010)

A Web Server for Multi-objective Pairwise RNA Sequence Alignment with an Index for Selecting Accurate Alignments. - Akito Taneda (Inf. Media Technol., 2011)

Multi-objective optimization for RNA design with multiple target secondary structures. - Akito Taneda (BMC Bioinform., 2015)

Evolutionary design of multiple genes encoding the same protein. - Goro Terai; Satoshi Kamegai; Akito Taneda; Kiyoshi Asai (Bioinform., 2017)

RNA inverse folding using Monte Carlo tree search. - Xiufeng Yang; Kazuki Yoshizoe; Akito Taneda; Koji Tsuda (BMC Bioinform., 2017)

Ant colony optimization for predicting RNA folding pathways. - Seira Takitou; Akito Taneda (Comput. Biol. Chem., 2019)