MarmoNet: a pipeline for automated projection mapping of the common marmoset brain from whole-brain serial two-photon tomography. - Henrik Skibbe; Akiya Watakabe; Ken Nakae; Carlos Enrique Gutierrez; Hiromichi Tsukada; Junichi Hata; Takashi Kawase; Rui Gong; Alexander Woodward; Kenji Doya; Hideyuki Okano; Tetsuo Yamamori; et al. (CoRR, 2019)

PAT - Probabilistic Axon Tracking for Densely Labeled Neurons in Large 3-D Micrographs. - Henrik Skibbe; Marco Reisert; Ken Nakae; Akiya Watakabe; Junichi Hata; Hiroaki Mizukami; Hideyuki Okano; Tetsuo Yamamori; Shin Ishii (IEEE Trans. Medical Imaging, 2019)

PatchMorph: A Stochastic Deep Learning Approach for Unsupervised 3D Brain Image Registration with Small Patches. - Henrik Skibbe; Michal Byra; Akiya Watakabe; Tetsuo Yamamori; Marco Reisert (CoRR, 2023)