Entropy Based Clustering of Viral Sequences. - Akshay Juyal; Roya Hosseini; Daniel Novikov; Mark Grinshpon; Alex Zelikovsky (ISBRA, 2022)

Plastic: An Easy to Use and Modular Tool for Benchmarking Tumor Phylogeny Reconstruction Pipelines. - Akshay Juyal; Zahra Tayebi; Alexander Zelikovsky; Mauricio Soto Gomez; Simone Ciccolella; Gianluca Della Vedova; Murray Patterson (ICCABS, 2023)

Genetic Algorithm with Evolutionary Jumps. - Hafsa Farooq; Daniel Novikov; Akshay Juyal; Alexander Zelikovsky (ISBRA, 2023)

Simulating Tumor Evolution from scDNA-Seq as an Accumulation of both SNVs and CNAs. - Zahra Tayebi; Akshay Juyal; Alexander Zelikovsky; Murray Patterson (ISBRA, 2023)

Reconstruction of Viral Variants via Monte Carlo Clustering. - Akshay Juyal; Roya Hosseini; Daniel Novikov; Mark Grinshpon; Alex Zelikovsky (J. Comput. Biol., 2023)

Estimating Enzyme Expression and Metabolic Pathway Activity in Borreliella-Infected and Uninfected Mice. - Filipp Rondel; Hafsa Farooq; Roya Hosseini; Akshay Juyal; Sergey Knyazev; Serghei Mangul; Artem S. Rogovskyy; Alexander Zelikovsky (J. Comput. Biol., 2025)