A distributed genetic algorithm for RNA secondary structure prediction. - Andrew Hendriks; Kay C. Wiese; Edward Glen; Alain Deschênes (IEEE Congress on Evolutionary Computation, 2003)

Permutation-based RNA secondary structure prediction via a genetic algorithm. - Kay C. Wiese; Alain Deschênes; Edward Glen (IEEE Congress on Evolutionary Computation, 2003)

Comparison of Permutation-Based and Binary Representation in a Genetic Algorithm for RNA Secondary Structure Prediction. - Alain Deschênes; Kay C. Wiese; Edward Glen (Canadian AI, 2004)

Using stacking-energies (INN and INN-HB) for improving the accuracy of RNA secondary structure prediction with an evolutionary algorithm - a comparison to known structures. - Alain Deschênes; Kay C. Wiese (IEEE Congress on Evolutionary Computation, 2004)

Comparison of dynamic programming and evolutionary algorithms for RNA secondary structure prediction. - Alain Deschênes; Kay C. Wiese; Jagdeep Poonian (CIBCB, 2004)

A parallel evolutionary algorithm for RNA secondary structure prediction using stacking-energies (INN and INN-HB). - Andrew Hendriks; Alain Deschênes; Kay C. Wiese (CIBCB, 2004)

Significance of randomness in P-RnaPredict - a parallel evolutionary algorithm for RNA folding. - Kay C. Wiese; Andrew Hendriks; Alain Deschênes; Belgacem Ben Youssef (Congress on Evolutionary Computation, 2005)

The impact of pseudorandom number quality on P-RnaPredict, a parallel genetic algorithm for RNA secondary structure prediction. - Kay C. Wiese; Andrew Hendriks; Alain Deschênes; Belgacem Ben Youssef (GECCO, 2005)

Analysis of Thermodynamic Models and Performance in RnaPredict - An Evolutionary Algorithm for RNA Folding. - Kay C. Wiese; Andrew Hendriks; Alain Deschênes (CIBCB, 2006)

Generation of New Synthetic Scaffolds Using Framework Libraries Selected and Refined via Medicinal Chemist Synthetic Expertise. - Thomas R. Webb; Ruben E. Venegas; Jian Wang; Alain Deschênes (J. Chem. Inf. Model., 2008)

RnaPredict-An Evolutionary Algorithm for RNA Secondary Structure Prediction. - Kay C. Wiese; Alain Deschênes; Andrew Hendriks (IEEE ACM Trans. Comput. Biol. Bioinform., 2008)