Analysis of one-dimensional electrophoregrams. - Alain Trubuil (Comput. Appl. Biosci., 1993)

A Level Line Selection Approach for Object Boundary Estimation. - Charles Kervrann; Mark Hoebeke; Alain Trubuil (ICCV, 1999)

Level Lines as Global Minimizers of Energy Functionals in Image Segmentation. - Charles Kervrann; Mark Hoebeke; Alain Trubuil (ECCV (2), 2000)

3D Biological Object Detection and Labeling in Multidimensional Microscopy Imaging. - Juhui Wang; Alain Trubuil; Christine Graffigne (ICIAP, 2001)

Model-based 3D object detection from multivariate confocal microscopy images. - Juhui Wang; Alain Trubuil; Christine Graffigne; Bertrand Kaeffer (ICIP (2), 2002)

Isophotes Selection and Reaction-Diffusion Model for Object Boundaries Estimation. - Charles Kervrann; Mark Hoebeke; Alain Trubuil (Int. J. Comput. Vis., 2002)

Optimal Level Curves and Global Minimizers of Cost Functionals in Image Segmentation. - Charles Kervrann; Alain Trubuil (J. Math. Imaging Vis., 2002)

3-D aggregated object detection and labeling from multivariate confocal microscopy images: A model validation approach. - Juhui Wang; Alain Trubuil; Christine Graffigne; Bertrand Kaeffer (IEEE Trans. Syst. Man Cybern. Part B, 2003)

An Adaptive Window Approach for Poisson Noise Reduction and Structure Preserving in Confocal Microscopy. - Alain Trubuil; Charles Kervrann (ISBI, 2004)

PARIS: a proteomic analysis and resources indexation system. - Juhui Wang; Christophe Caron; Michel-Yves Mistou; Christophe Gitton; Alain Trubuil (Bioinform., 2004)

A system for integrative and post-planned analysis of 2-DE/MS centered proteomics data. - Juhui Wang; Christophe Caron; Xuefeng He; Audrey Carpentier; Michel-Yves Mistou; Alain Trubuil; Christophe Gitton; Céline Henry; Alain Guillot (J. Integr. Bioinform., 2005)

A model selection approach for robust spatio-temporal analysis of dynamics in 4D fluorescence videomicroscopy. - Ikhlef Bechar; Alain Trubuil (EMBC, 2006)

Reliable Motion Detection and Analysis in Live-cell Imaging. - Ikhlef Bechar; Alain Trubuil (ISBI, 2007)

Tracking swimmers bacteria and pores within a biofilm. - Yingbo Li; Romain Briandet; Alain Trubuil (ISBI, 2014)

Cell geometry determines symmetric and asymmetric division plane selection in Arabidopsis early embryos. - Julien Moukhtar; Alain Trubuil; Katia Belcram; David Legland; Zhor Khadir; Aurélie Urbain; Jean-Christophe Palauqui; Philippe Andrey (PLoS Comput. Biol., 2019)

Design and Evaluation of Three Selection Techniques for Tightly Packed 3D Objects in Cell Lineage Specification in Botany. - Jiayi Hong; Ferran Argelaguet; Alain Trubuil; Tobias Isenberg 001 (Graphics Interface, 2021)

Probabilistic Reconstruction of Truncated Particle Trajectories on a Closed Surface. - Yunjiao Lu; Pierre Hodara; Charles Kervrann; Alain Trubuil (Multiscale Model. Simul., 2021)

LineageD: An Interactive Visual System for Plant Cell Lineage Assignments based on Correctable Machine Learning. - Jiayi Hong; Alain Trubuil; Tobias Isenberg 001 (Comput. Graph. Forum, 2022)

Challenges of intracellular visualization using virtual and augmented reality. - Cesar Augusto Valades-Cruz; Ludovic Leconte; Gwendal Fouché; Thomas Blanc; Nathan Van Hille; Kevin Fournier; Tao Laurent; Benjamin Gallean; Francois Deslandes; Bassam Hajj; Emmanuel Faure; Ferran Argelaguet; et al. (Frontiers Bioinform., 2022)

Visualizing and Comparing Machine Learning Predictions to Improve Human-AI Teaming on the Example of Cell Lineage. - Jiayi Hong; Ross Maciejewski; Alain Trubuil; Tobias Isenberg 001 (IEEE Trans. Vis. Comput. Graph., 2024)