Liftoff: accurate mapping of gene annotations. - Alaina Shumate; Steven L. Salzberg (Bioinform., 2021)

Improved transcriptome assembly using a hybrid of long and short reads with StringTie. - Alaina Shumate; Brandon M. Wong; Geo Pertea; Mihaela Pertea (PLoS Comput. Biol., 2022)