A solvation potential with improved contact definitions and optimized by extensive threading. - Alan A. Dombkowski; Gordon M. Crippen (RECOMB, 1999)

Disulfide by DesignTM: a computational method for the rational design of disulfide bonds in proteins. - Alan A. Dombkowski (Bioinform., 2003)

Augmented annotation and orthologue analysis for Oryctolagus cuniculus: Better Bunny. - Douglas B. Craig; Sujatha Kannan; Alan A. Dombkowski (BMC Bioinform., 2012)

Disulfide by design 2.0: a web-based tool for disulfide engineering in proteins. - Douglas B. Craig; Alan A. Dombkowski (BMC Bioinform., 2013)