STACK: Sequence Tag Alignment and Consensus Knowledgebase. - Alan Christoffels; Antoine van Gelder; Gary Greyling; Robert Miller; Tania Hide; Winston A. Hide (Nucleic Acids Res., 2001)

Assessment of the parallelization approach of d2_cluster for high-performance sequence clustering. - John E. Carpenter; Alan Christoffels; Yael Weinbach; Winston A. Hide (J. Comput. Chem., 2002)

Comparison of core promoters in Fugu rubripes and human. - Sin Lam Tan; Vidhu Choudhary; Alan Christoffels; Byrappa Venkatesh; Vladimir B. Bajic (APBC, 2005)

Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome. - Alan Christoffels; Richard Bartfai; Hamsa Srinivasan; Hans Komen; Laszlo Orban (BMC Bioinform., 2006)

Database for exploration of functional context of genes implicated in ovarian cancer. - Mandeep Kaur; Aleksandar Radovanovic; Magbubah Essack; Ulf Schaefer; Monique Maqungo; Tracey Kibler; Sebastian Schmeier; Alan Christoffels; Kothandaraman Narasimhan; Mahesh Choolani; Vladimir B. Bajic (Nucleic Acids Res., 2009)

DDPC: Dragon Database of Genes associated with Prostate Cancer. - Monique Maqungo; Mandeep Kaur; Samuel K. Kwofie; Aleksandar Radovanovic; Ulf Schaefer; Sebastian Schmeier; Ekow Oppon; Alan Christoffels; Vladimir B. Bajic (Nucleic Acids Res., 2011)

DAMPD: a manually curated antimicrobial peptide database. - Vijayaraghava Seshadri Sundararajan; Musa Nur Gabere; Ashley Pretorius; Saleem Adam; Alan Christoffels; Minna Lehväslaiho; John A. C. Archer; Vladimir B. Bajic (Nucleic Acids Res., 2012)

Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms. - Stanley Mbandi; Uljana Hesse; Peter van Heusden; Alan Christoffels (BMC Bioinform., 2015)

Resistance related metabolic pathways for drug target identification in Mycobacterium tuberculosis. - Ruben Cloete; Ekow Oppon; Edwin Murungi; Wolf-Dieter Schubert; Alan Christoffels (BMC Bioinform., 2016)

SNiPhunter: A SNP-Based Search Engine. - Werner Pieter Veldsman; Alan Christoffels (Data, 2016)

Identification of phenotype-relevant differentially expressed genes in breast cancer demonstrates enhanced quantile discretization protocol's utility in multi-platform microarray data integration. - Darlington S. Mapiye; Alan Christoffels; Junaid Gamieldien (J. Bioinform. Comput. Biol., 2016)

The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt. - Nicola J. Mulder; Alan Christoffels; Tulio de Oliveira; Junaid Gamieldien; Scott Hazelhurst; Fourie Joubert; Judit Kumuthini; Ché S. Pillay; Jacky L. Snoep; Özlem Tastan Bishop; Nicki Tiffin (PLoS Comput. Biol., 2016)

Prediction of human-Bacillus anthracis protein-protein interactions using multi-layer neural network. - Ibrahim Ahmed 003; Peter J. Witbooi; Alan Christoffels (Bioinform., 2018)

Genome Annotation: Perspective From Bacterial Genomes. - Alan Christoffels; Peter van Heusden (Encyclopedia of Bioinformatics and Computational Biology (3), 2019)

COMBAT-TB-NeoDB: fostering tuberculosis research through integrative analysis using graph database technologies. - Thoba Lose; Peter van Heusden; Alan Christoffels (Bioinform., 2020)

Increasing the presence of BIPOC researchers in computational science. - Christine Yifeng Chen; Alan Christoffels; Roger Dube; Kamuela Enos; Juan E. Gilbert; Sanmi Koyejo; Jason Leigh; Carlo Liquido; Amy McKee; Kari Noe; Tai-Quan Peng; Karaitiana Taiuru (Nat. Comput. Sci., 2024)

Publisher Correction: Increasing the presence of BIPOC researchers in computational science. - Christine Yifeng Chen; Alan Christoffels; Roger Dube; Kamuela Enos; Juan E. Gilbert; Sanmi Koyejo; Jason Leigh; Carlo Liquido; Amy McKee; Kari Noe; Tai-Quan Peng; Karaitiana Taiuru (Nat. Comput. Sci., 2024)