Cellular Open Resource (COR): a Public CellML Based Environment for Modeling Biological Function. - Alan Garny; Peter Kohl; Denis Noble (Int. J. Bifurc. Chaos, 2003)

Mechanical Interaction of Heterogeneous Cardiac Muscle Segments in silico: Effects on CA2+ Handling and Action Potential. - Olga Solovyova; Nathalie Vikulova; Leonid B. Katsnelson; Vladimir S. Markhasin; P. J. Noble; Alan Garny; Peter Kohl; Denis Noble (Int. J. Bifurc. Chaos, 2003)

On the application of partial evaluation to the optimisation of cardiac electrophysiological simulations. - Jonathan Cooper; Steve McKeever; Alan Garny (PEPM, 2006)

Chaste: A test-driven approach to software development for biological modelling. - Joe Pitt-Francis; Pras Pathmanathan; Miguel O. Bernabeu; Rafel Bordas; Jonathan Cooper; Alexander G. Fletcher; Gary R. Mirams; Philip J. Murray; James M. Osborne; Alex Walter; S. Jonathan Chapman; Alan Garny; et al. (Comput. Phys. Commun., 2009)

An overview of the CellML API and its implementation. - Andrew K. Miller; Justin Marsh; Adam Reeve; Alan Garny; Randall Britten; Matt D. B. Halstead; Jonathan Cooper; David P. Nickerson; Poul M. F. Nielsen (BMC Bioinform., 2010)

The Physiome Model Repository 2. - Tommy Yu; Catherine M. Lloyd; David P. Nickerson; Mike T. Cooling; Andrew K. Miller; Alan Garny; Jonna R. Terkildsen; James R. Lawson; Randall Britten; Peter J. Hunter; Poul M. F. Nielsen (Bioinform., 2011)

Revision history aware repositories of computational models of biological systems. - Andrew K. Miller; Tommy Yu; Randall Britten; Mike T. Cooling; James R. Lawson; Dougal Cowan; Alan Garny; Matt D. B. Halstead; Peter J. Hunter; David P. Nickerson; Geoff Nunns; Sarala M. Wimalaratne; et al. (BMC Bioinform., 2011)

Minimum Information About a Simulation Experiment (MIASE). - Dagmar Waltemath; Richard R. Adams; Daniel A. Beard; Frank T. Bergmann; Upinder S. Bhalla; Randall Britten; Vijayalakshmi Chelliah; Mike T. Cooling; Jonathan Cooper; Edmund J. Crampin; Alan Garny; Stefan Hoops; et al. (PLoS Comput. Biol., 2011)

Standards and tools supporting collaborative development of the virtual physiological human. - David P. Nickerson; Alan Garny; Poul M. F. Nielsen; Peter J. Hunter (EMBC, 2013)

Harmonizing semantic annotations for computational models in biology. - Maxwell Lewis Neal; Matthias König 003; David P. Nickerson; Goksel Misirli; Reza Kalbasi; Andreas Dräger; Koray Atalag; Vijayalakshmi Chelliah; Michael T. Cooling; Daniel L. Cook; Sharon M. Crook; Miguel de Alba; et al. (Briefings Bioinform., 2019)

CellML 2.0. - Michael Clerx; Michael T. Cooling; Jonathan Cooper; Alan Garny; Keri R. Moyle; David P. Nickerson; Poul M. F. Nielsen; Hugh Sorby (J. Integr. Bioinform., 2020)

The simulation experiment description markup language (SED-ML): language specification for level 1 version 4. - Lucian P. Smith; Frank T. Bergmann; Alan Garny; Tomás Helikar; Jonathan R. Karr; David P. Nickerson; Herbert M. Sauro; Dagmar Waltemath; Matthias König 003 (J. Integr. Bioinform., 2021)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (CoRR, 2022)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (Nucleic Acids Res., 2022)

CellML 2.0.1. - Michael Clerx; Michael T. Cooling; Jonathan Cooper; Alan Garny; Keri R. Moyle; David P. Nickerson; Poul M. F. Nielsen; Hugh Sorby (J. Integr. Bioinform., 2023)

The simulation experiment description markup language (SED-ML): language specification for level 1 version 5. - Lucian P. Smith; Frank T. Bergmann; Alan Garny; Tomás Helikar; Jonathan R. Karr; David P. Nickerson; Herbert M. Sauro; Dagmar Waltemath; Matthias König 003 (J. Integr. Bioinform., 2024)