Geometric Analysis of Cross-Linkability for Protein Fold Discrimination. - Shobha Potluri; Aly Azeem Khan; A. Kuzminykh; Janusz M. Bujnicki; Alan M. Friedman; Chris Bailey-Kellogg (Pacific Symposium on Biocomputing, 2004)

Hypergraph Model of Multi-Residue Interactions in Proteins: Sequentially-Constrained Partitioning Algorithms for Optimization of Site-Directed Protein Recombination. - Xiaoduan Ye; Alan M. Friedman; Chris Bailey-Kellogg (J. Comput. Biol., 2007)

Algorithms for Joint Optimization of Stability and Diversity in Planning Combinatorial Libraries of Chimeric Proteins. - Wei Zheng 009; Alan M. Friedman; Chris Bailey-Kellogg (J. Comput. Biol., 2009)

Characterizing the Space of interatomic Distance Distribution Functions Consistent with Solution Scattering Data. - Paritosh A. Kavathekar; Bruce A. Craig; Alan M. Friedman; Chris Bailey-Kellogg; Devin J. Balkcom (J. Bioinform. Comput. Biol., 2010)

Using physicochemical properties of amino acids to induce graphical models of residue couplings. - K. S. M. Tozammel Hossain; Chris Bailey-Kellogg; Alan M. Friedman; Michael J. Bradley; Nathan A. Baker; Naren Ramakrishnan (BIOKDD, 2011)

Planning combinatorial disulfide cross-links for protein fold determination. - Fei Xiong; Alan M. Friedman; Chris Bailey-Kellogg (BMC Bioinform., 2011)

Algorithms for optimizing cross-overs in DNA shuffling. - Lu He; Alan M. Friedman; Chris Bailey-Kellogg (BMC Bioinform., 2012)