JavaShade: multiple sequence alignment box-and-shading on the World Wide Web. - Mark R. Southern; Alan P. Lewis (Bioinform., 1998)

SCALOP: sequence-based antibody canonical loop structure annotation. - Wing Ki Wong; Guy Georges; Francesca Ros; Sebastian Kelm; Alan P. Lewis; Bruck Taddese; Jinwoo Leem; Charlotte M. Deane (Bioinform., 2019)

TCRBuilder: multi-state T-cell receptor structure prediction. - Wing Ki Wong; Claire Marks; Jinwoo Leem; Alan P. Lewis; Jiye Shi; Charlotte M. Deane (Bioinform., 2020)

Thera-SAbDab: the Therapeutic Structural Antibody Database. - Matthew I. J. Raybould; Claire Marks; Alan P. Lewis; Jiye Shi; Alexander Bujotzek; Bruck Taddese; Charlotte M. Deane (Nucleic Acids Res., 2020)

Public Baseline and shared response structures support the theory of antibody repertoire functional commonality. - Matthew I. J. Raybould; Claire Marks; Aleksandr Kovaltsuk; Alan P. Lewis; Jiye Shi; Charlotte M. Deane (PLoS Comput. Biol., 2021)