Collective Coordinates and Length-Scale Competition in Spatially Inhomogeneous Soliton-Bearing Equations. - Ángel Sánchez; Alan R. Bishop (SIAM Rev., 1998)

Domain walls of single-component Bose-Einstein condensates in external potentials. - Panayotis G. Kevrekidis; Boris A. Malomed; Dimitri J. Frantzeskakis; Alan R. Bishop; Hector E. Nistazakis; Ricardo Carretero-González (Math. Comput. Simul., 2005)

Soliton trains and vortex streets as a form of Cerenkov radiation in trapped Bose-Einstein condensates. - Ricardo Carretero-González; Panayotis G. Kevrekidis; Dimitri J. Frantzeskakis; Boris A. Malomed; S. Nandi; Alan R. Bishop (Math. Comput. Simul., 2007)

Asymptotic calculation of discrete non-linear wave interactions. - Panayotis G. Kevrekidis; Avinash Khare; Avadh Saxena; I. Bena; Alan R. Bishop (Math. Comput. Simul., 2007)

Modelling the magnetic signature of neuronal tissue. - K. B. Blagoev; Bogdan Mihaila; B. J. Travis; Ludmil B. Alexandrov; Alan R. Bishop; Douglas M. Ranken; Stefan Posse; Charles Gasparovic; Andy R. Mayer; Cheryl J. Aine; István Ulbert; M. Morita; et al. (NeuroImage, 2007)

Toward a Detailed Description of the Thermally Induced Dynamics of the Core Promoter. - Boian S. Alexandrov; Vladimir Gelev; Sang Wook Yoo; Alan R. Bishop; Kim Ø. Rasmussen; Anny Usheva (PLoS Comput. Biol., 2009)

Sparse Matrix-vector Multiplication on GPGPU Clusters: A New Storage Format and a Scalable Implementation. - Moritz Kreutzer; Georg Hager; Gerhard Wellein; Holger Fehske; Achim Basermann; Alan R. Bishop (IPDPS Workshops, 2012)

A unified sparse matrix data format for modern processors with wide SIMD units. - Moritz Kreutzer; Georg Hager; Gerhard Wellein; Holger Fehske; Alan R. Bishop (CoRR, 2013)

Binding of Nucleoid-Associated Protein Fis to DNA Is Regulated by DNA Breathing Dynamics. - Kristy Nowak-Lovato; Ludmil B. Alexandrov; Afsheen Banisadr; Amy L. Bauer; Alan R. Bishop; Anny Usheva; Fangping Mu; Elizabeth Hong-Geller; Kim Ø. Rasmussen; William S. Hlavacek; Boian S. Alexandrov (PLoS Comput. Biol., 2013)

Non-Hermitian quantum annealing in the antiferromagnetic Ising chain. - Alexander I. Nesterov; Gennady P. Berman; Juan C. Beas Zepeda; Alan R. Bishop (Quantum Inf. Process., 2014)

A Unified Sparse Matrix Data Format for Efficient General Sparse Matrix-Vector Multiplication on Modern Processors with Wide SIMD Units. - Moritz Kreutzer; Georg Hager; Gerhard Wellein; Holger Fehske; Alan R. Bishop (SIAM J. Sci. Comput., 2014)

The role of structural parameters in DNA cyclization. - Ludmil B. Alexandrov; Alan R. Bishop; Kim Ø. Rasmussen; Boian S. Alexandrov (BMC Bioinform., 2016)

Performance Engineering and Energy Efficiency of Building Blocks for Large, Sparse Eigenvalue Computations on Heterogeneous Supercomputers. - Moritz Kreutzer; Jonas Thies; Andreas Pieper; Andreas Alvermann; Martin Galgon; Melven Röhrig-Zöllner; Faisal Shahzad 001; Achim Basermann; Alan R. Bishop; Holger Fehske; Georg Hager; Bruno Lang; et al. (Software for Exascale Computing, 2016)

Chebyshev Filter Diagonalization on Modern Manycore Processors and GPGPUs. - Moritz Kreutzer; Dominik Ernst; Alan R. Bishop; Holger Fehske; Georg Hager; Kengo Nakajima; Gerhard Wellein (ISC, 2018)

Chebyshev Filter Diagonalization on Modern Manycore Processors and GPGPUs. - Moritz Kreutzer; Georg Hager; Dominik Ernst; Holger Fehske; Alan R. Bishop; Gerhard Wellein (CoRR, 2018)

Understanding HPC Benchmark Performance on Intel Broadwell and Cascade Lake Processors. - Christie L. Alappat; Johannes Hofmann 001; Georg Hager; Holger Fehske; Alan R. Bishop; Gerhard Wellein (ISC, 2020)

A Recursive Algebraic Coloring Technique for Hardware-efficient Symmetric Sparse Matrix-vector Multiplication. - Christie L. Alappat; Achim Basermann; Alan R. Bishop; Holger Fehske; Georg Hager; Olaf Schenk; Jonas Thies; Gerhard Wellein (ACM Trans. Parallel Comput., 2020)

Examining DNA breathing with pyDNA-EPBD. - Anowarul Kabir; Manish Bhattarai; Kim Ø. Rasmussen; Amarda Shehu; Anny Usheva; Alan R. Bishop; Boian S. Alexandrov (Bioinform., 2023)