Classification of microarrays to nearest centroids. - Alan R. Dabney (Bioinform., 2005)

ClaNC: point-and-click software for classifying microarrays to nearest centroids. - Alan R. Dabney (Bioinform., 2006)

EDGE: extraction and analysis of differential gene expression. - Jeffrey T. Leek; Eva Monsen; Alan R. Dabney; John D. Storey (Bioinform., 2006)

A statistical framework for protein quantitation in bottom-up MS-based proteomics. - Yuliya V. Karpievitch; Jeff Stanley; Thomas Taverner; Jianhua Huang; Joshua N. Adkins; Charles Ansong; Fred Heffron; Thomas O. Metz; Wei-Jun Qian; Hyunjin Yoon; Richard D. Smith; Alan R. Dabney (Bioinform., 2009)

Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition. - Yuliya V. Karpievitch; Thomas Taverner; Joshua N. Adkins; Stephen J. Callister; Gordon A. Anderson; Richard D. Smith; Alan R. Dabney (Bioinform., 2009)

DanteR: an extensible R-based tool for quantitative analysis of -omics data. - Thomas Taverner; Yuliya V. Karpievitch; Ashoka D. Polpitiya; Joseph N. Brown; Alan R. Dabney; Gordon A. Anderson; Richard D. Smith (Bioinform., 2012)

Application of survival analysis methodology to the quantitative analysis of LC-MS proteomics data. - Carmen D. Tekwe; Raymond J. Carroll; Alan R. Dabney (Bioinform., 2012)

A hybrid approach to protein differential expression in mass spectrometry-based proteomics. - Xuan Wang; Gordon A. Anderson; Richard D. Smith; Alan R. Dabney (Bioinform., 2012)

Normalization and missing value imputation for label-free LC-MS analysis. - Yuliya V. Karpievitch; Alan R. Dabney; Richard D. Smith (BMC Bioinform., 2012)