TreeScan: a bioinformatic application to search for genotype/phenotype associations using haplotype trees. - David Posada; Taylor J. Maxwell; Alan R. Templeton (Bioinform., 2005)

Panel Construction for Mapping in Admixed Populations Via Expected Mutual Information. - Sivan Bercovici; Dan Geiger; Liran Shlush; Karl Skorecki; Alan A. Templeton (RECOMB, 2008)

How frugal is mother nature with haplotypes? - Sharlee Climer; Gerold Jäger; Alan R. Templeton; Weixiong Zhang (Bioinform., 2009)

SplittingHeirs: inferring haplotypes by optimizing resultant dense graphs. - Sharlee Climer; Alan R. Templeton; Weixiong Zhang (BCB, 2010)

Allele-Specific Network Reveals Combinatorial Interaction That Transcends Small Effects in Psoriasis GWAS. - Sharlee Climer; Alan R. Templeton; Weixiong Zhang (PLoS Comput. Biol., 2014)

Selection of models for the analysis of risk-factor trees: leveraging biological knowledge to mine large sets of risk factors with application to microbiome data. - Qunyuan Zhang; Haley Abel; Alan Wells; Petra Lenzini; Felicia Gomez; Michael A. Province; Alan A. Templeton; George M. Weinstock; Nita H. Salzman; Ingrid B. Borecki (Bioinform., 2015)

Predicting COVID-19 Severity Using a Cut-and-Solve Feature Selection Approach. - Kenneth Smith 003; Michael Chan; John Brandenburg; Katarina A Jones; Shawn R. Campagna; Michael Garvin; Alan R. Templeton; Daniel A. Jacobson; Carlos Cruchaga; Sharlee Climer (BIBM, 2023)