Multiple Memory Consistency Models on a SVM Parallel Programming Environment. - Alba Cristina Magalhaes Alves de Melo (OPODIS, 1997)

Visual-MCM: Visualising Execution Histories on Multiple Memory Consistency Models. - Alba Cristina Magalhaes Alves de Melo; Simone Cintra Chagas (ACPC, 1999)

Defining Uniform and Hybrid Memory Consistency Models on a Unified Framework. - Alba Cristina Magalhaes Alves de Melo (HICSS, 1999)

Application-Controlled Coherence Protocols for Scope Consistent Software DSMs. - Cicero Roberto de Oliveira Galdino; Alba Cristina Magalhaes Alves de Melo (HPCN Europe, 2001)

Using a Classifier System to Improve Dynamic Load Balancing. - Jan Mendonca Correa; Alba Cristina Magalhaes Alves de Melo (ICPP Workshops, 2001)

Integrating Optimistic Virtual Synchrony to a CORBA Object Group Service. - Gláucia de Oliveira Dias; Alba Cristina Magalhaes Alves de Melo (OTM, 2002)

Using ant-behavior-based simulation model AntWeb to improve website organization. - Weigang Li 001; Marcos Vinícius Pinheiro Dib; Wesley Martins Teles; Vlaudemir Morais de Andrade; Alba C. M. A. Melo; Judas T. Cariolano (Data Mining and Knowledge Discovery: Theory, Tools, and Technology, 2002)

Comparing Two Long Biological Sequences Using a DSM System. - Renata Cristina Faray Melo; Maria Emília Telles Walter; Alba Cristina Magalhaes Alves de Melo; Rodolfo Bezerra Batista; Marcelo Nardelli Pinto Santana; Thelmo E. S. Martins; Tiago M. Fonseca (Euro-Par, 2003)

Parallel DNA Sequence Alignment Using a DSM System in a Cluster of Workstations. - Renata Cristina Faray Melo; Maria Emília Telles Walter; Alba Cristina Magalhaes Alves de Melo; Rodolfo Bezerra Batista (International Conference on Computational Science, 2003)

Computing Binary Space Partition Trees using a Scope Consistent DSM System in a Cluster of Workstations. - Rodolfo Bezerra Batista; Alerrandro L. A. C. Correa; Alba Cristina Magalhaes Alves de Melo (PDP, 2003)

Using a DSM application to locally align DNA sequences. - Rodolfo Bezerra Batista; D. N. Silva; Alba Cristina Magalhaes Alves de Melo; Weigang Li 001 (CCGRID, 2004)

A Performance Evaluation of a Local DNA Sequence Alignment Algorithm on a Cluster of Workstations. - Azzedine Boukerche; Alba Cristina Magalhaes Alves de Melo; Maria Emília Telles Walter; Renata Cristina Faray Melo; Marcelo Nardelli Pinto Santana; Rodolfo Bezerra Batista (IPDPS, 2004)

Distributed Knowledge Based System Using Grid Computing for Real Time Air Traffic Synchronization - ATFMGC. - Weigang Li 001; Daniel Amaral Cardoso; Marcos Vinícius Pinheiro Dib; Alba Cristina Magalhaes Alves de Melo (SEKE, 2004)

Rede BIOFOCO: A distributed computation of Interpro Pfam, PROSITE and ProDom for protein annotation. - Edward de Oliveira Ribeiro; Gustavo G. Zerlotini; Irving Lopes; Victor Ribeiro; Alba Cristina Magalhaes Alves de Melo; Maria Emília Telles Walter; Marcos Motta (WOB, 2004)

Parallel Biological Sequence Comparison in Heterogeneous Systems Using CORBA. - Andre Riccioppo; Alba Cristina Magalhaes Alves de Melo (WOB, 2004)

Local DNA Sequence Alignment in a Cluster ofWorkstations: Algorithms and Tools. - Alba Cristina Magalhaes Alves de Melo; Maria Emília M. T. Walter; Renata Cristina Faray Melo; Marcelo Nardelli Pinto Santana; Rodolfo Bezerra Batista (J. Braz. Comput. Soc., 2004)

Method to Balance the Communication Among Multi-agents in Real Time Traffic Synchronization. - Weigang Li 001; Marcos Vinícius Pinheiro Dib; Alba Cristina Magalhaes Alves de Melo (FSKD (1), 2005)

Multiple Coherence and Coordinated Checkpointing Protocols for DSM Systems. - Azzedine Boukerche; Alba Cristina Magalhaes Alves de Melo; Jeferson G. Koch; Cicero Roberto de Oliveira Galdino (ICPP Workshops, 2005)

Parallel Strategies for Local Biological Sequence Alignment in a Cluster of Workstations. - Azzedine Boukerche; Alba Cristina Magalhaes Alves de Melo; Mauricio Ayala-Rincón; Thomas Mailleux Santana (IPDPS, 2005)

Obtaining possible execution histories on multiple memory consistency models. - Alba Cristina Magalhaes Alves de Melo; Nilo S. B. Silva; Hammurabi das Chagas Mendes; Diego F. Aranha (SCCC, 2005)

Integrating Coordinated Checkpointing and Recovery Mechanisms into DSM Synchronization Barriers. - Azzedine Boukerche; Jeferson G. Koch; Alba Cristina Magalhaes Alves de Melo (WEA, 2005)

Parallel Smith-Waterman Algorithm for Local DNA Comparison in a Cluster of Workstations. - Azzedine Boukerche; Alba Cristina Magalhaes Alves de Melo; Mauricio Ayala-Rincón; Thomas Mailleux Santana (WEA, 2005)

An Extensible Resource Discovery Mechanism for Grid Computing Environments. - Tania Gomes Ramos; Alba Cristina Magalhaes Alves de Melo (CCGRID, 2006)

Z-align: An Exact and Parallel Strategy for Local Biological Sequence Alignment in User-Restricted Memory Space. - Rodolfo Bezerra Batista; Alba Cristina Magalhaes Alves de Melo (CLUSTER, 2006)

A Proposal and Evaluation of a Mechanism for Grid Ontology Merge. - J. G. R. C. Lopes; Alba Cristina Magalhaes Alves de Melo; Mario A. R. Dantas; Célia Ghedini Ralha (HPCS, 2006)

A multiple task allocation framework for biological sequence comparison in a grid environment. - Azzedine Boukerche; Marcelo S. Sousa; Alba Cristina Magalhaes Alves de Melo (IPDPS, 2006)

PackageBLAST: an adaptive multi-policy grid service for biological sequence comparison. - Marcelo S. Sousa; Alba Cristina Magalhaes Alves de Melo (SAC, 2006)

Integrating coordinated checkpointing and recovery mechanisms into DSM synchronization barriers. - Azzedine Boukerche; Alba Cristina Magalhaes Alves de Melo (ACM J. Exp. Algorithmics, 2006)

Bioinformatics Applications in Grid Computing Environments. - Azzedine Boukerche; Alba Cristina Magalhaes Alves de Melo (Grid Computing for Bioinformatics and Computational Biology, 2007)

An FPGA-Based Accelerator for Multiple Biological Sequence Alignment with DIALIGN. - Azzedine Boukerche; Jan Mendonca Correa; Alba Cristina Magalhaes Alves de Melo; Ricardo P. Jacobi; Adson Ferreira da Rocha (HiPC, 2007)

Reconfigurable Architecture for Biological Sequence Comparison in Reduced Memory Space. - Azzedine Boukerche; Jan Mendonca Correa; Alba Cristina Magalhaes Alves de Melo; Ricardo P. Jacobi; Adson Ferreira da Rocha (IPDPS, 2007)

A Four-layered Semantic Grid Architecture. - Célia Ghedini Ralha; Jose Nelson C. Allemand; Alba Cristina Magalhaes Alves de Melo (SEKE, 2007)

Biological Sequence Comparison Application in Heterogeneous Environments with Dynamic Programming Algorithms. - Marcelo Nardelli Pinto Santana; Alba Cristina Magalhaes Alves de Melo (BSB, 2007)

An exact parallel algorithm to compare very long biological sequences in clusters of workstations. - Azzedine Boukerche; Alba Cristina Magalhaes Alves de Melo; Edans Flavius de Oliveira Sandes; Mauricio Ayala-Rincón (Clust. Comput., 2007)

Parallel strategies for the local biological sequence alignment in a cluster of workstations. - Azzedine Boukerche; Alba Cristina Magalhaes Alves de Melo; Mauricio Ayala-Rincón; Maria Emília Telles Walter (J. Parallel Distributed Comput., 2007)

GrAMoS: A Flexible Service for WS-Agreement Monitoring in Grid Environments. - Glauber Scorsatto; Alba Cristina Magalhaes Alves de Melo (Euro-Par, 2008)

A task allocation framework for biological sequence comparison applications in heterogeneous environments. - Azzedine Boukerche; Marcelo Nardelli Pinto Santana; Alba Cristina Magalhaes Alves de Melo (IPDPS, 2008)

A parallel strategy for biological sequence alignment in restricted memory space. - Rodolfo Bezerra Batista; Azzedine Boukerche; Alba Cristina Magalhaes Alves de Melo (J. Parallel Distributed Comput., 2008)

Exact pairwise alignment of megabase genome biological sequences using a novel z-align parallel strategy. - Azzedine Boukerche; Rodolfo Bezerra Batista; Alba Cristina Magalhaes Alves de Melo (IPDPS, 2009)

Bag-of-Tasks Self-Scheduling over Range-Queriable Search Overlays. - Hammurabi das Chagas Mendes; Weigang Li 001; Azzedine Boukerche; Alba Cristina Magalhaes Alves de Melo (NPC, 2009)

A HMMER hardware accelerator using divergences. - Juan Fernando Eusse Giraldo; Nahri Moreano; Ricardo Pezzuol Jacobi; Alba Cristina Magalhaes Alves de Melo (DATE, 2010)

Multiple Biological Sequence Alignment with a Parallel Island Injection Genetic Algorithm. - Lidia A. Miranda; Marcos F. Caetano; Alba Cristina Magalhaes Alves de Melo; Jan Mendonca Correa; Jacir Luiz Bordim (HPCC, 2010)

CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences. - Edans Flavius de Oliveira Sandes; Alba Cristina Magalhaes Alves de Melo (PPoPP, 2010)

Impact Analysis Model for Brasília Area Control Center using Multi-agent System with Reinforcement Learning. - Antonio Carlos de Arruda Junior; Alessandro Ferreira Leite; Cícero Roberto Ferreira de Almeida; Alba Cristina Magalhaes Alves de Melo; Li Weigang 001 (SEKE, 2010)

An adaptive multi-policy grid service for biological sequence comparison. - Marcelo S. Sousa; Alba Cristina Magalhaes Alves de Melo; Azzedine Boukerche (J. Parallel Distributed Comput., 2010)

A Hardware Accelerator for the Fast Retrieval of DIALIGN Biological Sequence Alignments in Linear Space. - Azzedine Boukerche; Jan Mendonca Correa; Alba Cristina Magalhaes Alves de Melo; Ricardo P. Jacobi (IEEE Trans. Computers, 2010)

User-Defined Adaptive Fault-Tolerant Execution of Workflows in the Grid. - Felipe Pontes Guimarães; Alba Cristina Magalhaes Alves de Melo (CIT, 2011)

A fragment based alignment in linear space. - Jan Mendonca Correa; Alba Cristina Magalhaes Alves de Melo; Ricardo P. Jacobi; Azzedine Boukerche (BIBM Workshops, 2011)

A WS-Agreement-Based QoS Auditor Negotiation Mechanism for Grids. - Alisson Andrade; Alba Cristina Magalhaes Alves de Melo (GRID, 2011)

Hybrid MPI/OpenMP Strategy for Biological Multiple Sequence Alignment with DIALIGN-TX in Heterogeneous Multicore Clusters. - Emerson de Araujo Macedo; Alba Cristina Magalhaes Alves de Melo; Gerson Henrique Pfitscher; Azzedine Boukerche (IPDPS Workshops, 2011)

Smith-Waterman Alignment of Huge Sequences with GPU in Linear Space. - Edans Flavius de Oliveira Sandes; Alba Cristina Magalhaes Alves de Melo (IPDPS, 2011)

Energy-Aware Multi-Agent Server Consolidation in Federated Clouds. - Alessandro Ferreira Leite; Alba Cristina Magalhaes Alves de Melo (CloudComp, 2012)

Executing a biological sequence comparison application on a federated cloud environment. - Alessandro Ferreira Leite; Alba Cristina Magalhaes Alves de Melo (HiPC, 2012)

Record Route Elimination (RRE): An Energy-Efficient Broadcast Algorithm. - Edans Flavius de Oliveira Sandes; Jacir Luiz Bordim; Alba Cristina Magalhaes Alves de Melo; Yasuaki Ito (ICNC, 2012)

Parallel Simulated Annealing for Fragment Based Sequence Alignment. - Jan Mendonca Correa; Alba Cristina Magalhaes Alves de Melo; Ricardo P. Jacobi; Azzedine Boukerche (IPDPS Workshops, 2012)

Logical Model of Relationship for Online Social Networks and Performance Optimizing of Queries - WISE 2012 Challenge - T1: Performance Track Scalability Winner. - Edans Flavius de Oliveira Sandes; Li Weigang 001; Alba Cristina Magalhaes Alves de Melo (WISE, 2012)

An architecture for P2P bag-of-tasks execution with multiple task allocation policies in desktop grids. - Alessandro Ferreira Leite; Hammurabi das Chagas Mendes; Weigang Li 001; Alba Cristina Magalhaes Alves de Melo; Azzedine Boukerche (Clust. Comput., 2012)

Exact Parallel Alignment of megabase genomic Sequences with Tunable Work Distribution. - Azzedine Boukerche; Rodolfo Bezerra Batista; Alba Cristina Magalhaes Alves de Melo; Felipe Brandt Scarel; Lavir Antonio Bahia Carvalho de Souza (Int. J. Found. Comput. Sci., 2012)

A Protein Sequence Analysis Hardware Accelerator Based on Divergences. - Juan Fernando Eusse Giraldo; Nahri Moreano; Alba Cristina Magalhaes Alves de Melo; Ricardo Pezzuol Jacobi (Int. J. Reconfigurable Comput., 2012)

Topic 11: Multicore and Manycore Programming - (Introduction). - Luiz De Rose; Jan Treibig; William Jalby; Alba Cristina Magalhaes Alves de Melo; David Abramson 001; Alastair F. Donaldson; Tomàs Margalef (Euro-Par, 2013)

Biological Sequence Comparison on Hybrid Platforms with Dynamic Workload Adjustment. - Fernando Machado Mendonca; Alba Cristina Magalhaes Alves de Melo (IPDPS Workshops, 2013)

A Pipeline to Characterize Virulence Factors in Mycobacterium Massiliense Genome. - Guilherme Menegói; Tainá Raiol; João Victor de Araújo Oliveira; Edans Flavius de Oliveira Sandes; Alba Cristina Magalhaes Alves de Melo; Andrea Queiroz Maranhão; Ildinete Silva-Pereira; Anamélia Lorenzetti Bocca; Ana Paula Junqueira-Kipnis; Maria Emília M. T. Walter; André Kipnis; Marcelo de Macedo Brígido (BSB, 2013)

MSA-GPU: Exact Multiple Sequence Alignment Using GPU. - Daniel Sundfeld; Alba Cristina Magalhaes Alves de Melo (BSB, 2013)

Parallel Smith-Waterman Comparison on Multicore and Manycore Computing Platforms with BSP++. - Khaled Hamidouche; Fernando Machado Mendonca; Joel Falcou; Alba Cristina Magalhaes Alves de Melo; Daniel Etiemble (Int. J. Parallel Program., 2013)

Multiple biological sequence alignment in heterogeneous multicore clusters with user-selectable task allocation policies. - Emerson de Araujo Macedo; Alba Cristina Magalhaes Alves de Melo; Gerson Henrique Pfitscher; Azzedine Boukerche (J. Supercomput., 2013)

Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences Using GPU. - Edans Flavius de Oliveira Sandes; Alba Cristina Magalhaes Alves de Melo (IEEE Trans. Parallel Distributed Syst., 2013)

CUDAlign 3.0: Parallel Biological Sequence Comparison in Large GPU Clusters. - Edans F. de O. Sandes; Guillermo Miranda; Alba Cristina Magalhaes Alves de Melo; Xavier Martorell; Eduard Ayguadé (CCGRID, 2014)

Excalibur: an autonomic cloud architecture for executing parallel applications. - Alessandro Ferreira Leite; Tainá Raiol; Claude Tadonki; Maria Emília M. T. Walter; Christine Eisenbeis; Alba Cristina Magalhaes Alves de Melo (CloudDP@EuroSys, 2014)

A Fine-grained Approach for Power Consumption Analysis and Prediction. - Alessandro Ferreira Leite; Claude Tadonki; Christine Eisenbeis; Alba de Melo (ICCS, 2014)

HiCOMB Introduction and Committees. - Alba Cristina Magalhaes Alves de Melo; Srinivas Aluru; David A. Bader (IPDPS Workshops, 2014)

Fine-grain parallel megabase sequence comparison with multiple heterogeneous GPUs. - Edans F. de O. Sandes; Guillermo Miranda; Alba Cristina Magalhaes Alves de Melo; Xavier Martorell; Eduard Ayguadé (PPoPP, 2014)

An agent-based solution for dynamic multi-node wavefront balancing in biological sequence comparison. - Edans Flavius de Oliveira Sandes; Célia Ghedini Ralha; Alba Cristina Magalhaes Alves de Melo (Expert Syst. Appl., 2014)

A Framework for Adaptive Fault-Tolerant Execution of Workflows in the Grid: Empirical and Theoretical Analysis. - Felipe Pontes Guimarães; Pedro Célestin; Daniel Macêdo Batista; Genaína Nunes Rodrigues; Alba Cristina Magalhaes Alves de Melo (J. Grid Comput., 2014)

Guest Editorial. - Alba de Melo; Jean-Luc Gaudiot; Luiz De Rose; Kunle Olukotun; Albert Y. Zomaya (Int. J. Parallel Program., 2014)

Querying dynamic communities in online social networks. - Li Weigang 001; Edans F. de O. Sandes; Jianya Zheng; Alba Cristina Magalhaes Alves de Melo; Lorna Uden (J. Zhejiang Univ. Sci. C, 2014)

Automating Resource Selection and Configuration in Inter-clouds through a Software Product Line Method. - Alessandro Ferreira Leite; Vander Alves; Genaína Nunes Rodrigues; Claude Tadonki; Christine Eisenbeis; Alba Cristina Magalhaes Alves de Melo (CLOUD, 2015)

Parallel A-Star Multiple Sequence Alignment with Locality-Sensitive Hash Functions. - Daniel Sundfeld; George Teodoro; Alba Cristina Magalhaes Alves de Melo (CISIS, 2015)

Parallel Megabase DNA Sequence Comparison with OpenCL. - Marco Antonio C. de Figueiredo; Edans F. de O. Sandes; Alba Cristina Magalhaes Alves de Melo (HiPC, 2015)

Efficient Irregular Wavefront Propagation Algorithms on Intel(R) Xeon Phi(TM). - Jeremias M. Gomes; George Teodoro; Alba de Melo; Jun Kong 002; Tahsin M. Kurç; Joel H. Saltz (SBAC-PAD, 2015)

Autonomic Provisioning, Configuration, and Management of Inter-cloud Environments Based on a Software Product Line Engineering Method. - Alessandro Ferreira Leite; Vander Alves; Genaína Nunes Rodrigues; Claude Tadonki; Christine Eisenbeis; Alba Cristina Magalhaes Alves de Melo (ICCAC, 2016)

Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment. - Daniel Sundfeld; Jakob Hull Havgaard; Alba Cristina Magalhaes Alves de Melo; Jan Gorodkin (Bioinform., 2016)

Power-aware server consolidation for federated clouds. - Alessandro Ferreira Leite; Azzedine Boukerche; Alba Cristina Magalhaes Alves de Melo; Christine Eisenbeis; Claude Tadonki; Célia Ghedini Ralha (Concurr. Comput. Pract. Exp., 2016)

Efficient Methods and Parallel Execution for Algorithm Sensitivity Analysis with Parameter Tuning on Microscopy Imaging Datasets. - George Teodoro; Tahsin M. Kurç; Luis F. R. Taveira; Alba C. M. A. Melo; Jun Kong 002; Joel H. Saltz (CoRR, 2016)

Parallel Optimal Pairwise Biological Sequence Comparison: Algorithms, Platforms, and Classification. - Edans Flavius de Oliveira Sandes; Azzedine Boukerche; Alba Cristina Magalhaes Alves de Melo (ACM Comput. Surv., 2016)

MASA: A Multiplatform Architecture for Sequence Aligners with Block Pruning. - Edans Flavius de Oliveira Sandes; Guillermo Miranda; Xavier Martorell; Eduard Ayguadé; George Teodoro; Alba Cristina Magalhaes Alves de Melo (ACM Trans. Parallel Comput., 2016)

CUDAlign 4.0: Incremental Speculative Traceback for Exact Chromosome-Wide Alignment in GPU Clusters. - Edans Flavius de Oliveira Sandes; Guillermo Miranda; Xavier Martorell; Eduard Ayguadé; George Teodoro; Alba Cristina Magalhaes Alves de Melo (IEEE Trans. Parallel Distributed Syst., 2016)

Parallel Biological Sequence Comparison in Linear Space with Multiple Adjustable Bands. - Gabriel H. G. Silva; Edans F. de O. Sandes; George Teodoro; Alba C. M. A. Melo (AlCoB, 2017)

Parallel and Efficient Sensitivity Analysis of Microscopy Image Segmentation Workflows in Hybrid Systems. - Willian Barreiros; George Teodoro; Tahsin M. Kurç; Jun Kong 002; Alba C. M. A. Melo; Joel H. Saltz (CLUSTER, 2017)

Smith-Waterman Acceleration in Multi-GPUs: A Performance per Watt Analysis. - Jesús Pérez Serrano; Edans Flavius de Oliveira Sandes; Alba Cristina Magalhaes Alves de Melo; Manuel Ujaldón (IWBBIO (2), 2017)

CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment. - Daniel Sundfeld; Jakob Hull Havgaard; Jan Gorodkin; Alba Cristina Magalhaes Alves de Melo (PDP, 2017)

Algorithm sensitivity analysis and parameter tuning for tissue image segmentation pipelines. - George Teodoro; Tahsin M. Kurç; Luis F. R. Taveira; Alba C. M. A. Melo; Yi Gao 002 (Bioinform., 2017)

Dohko: an autonomic system for provision, configuration, and management of inter-cloud environments based on a software product line engineering method. - Alessandro Ferreira Leite; Vander Alves; Genaína Nunes Rodrigues; Claude Tadonki; Christine Eisenbeis; Alba Cristina Magalhaes Alves de Melo (Clust. Comput., 2017)

DNA sequences alignment in multi-GPUs: acceleration and energy payoff. - Jesús Pérez Serrano; Edans F. de O. Sandes; Alba Cristina Magalhaes Alves de Melo; Manuel Ujaldón (BMC Bioinform., 2018)

Formalization of Block Pruning: Reducing the Number of Cells Computed in Exact Biological Sequence Comparison Algorithms. - Edans Flavius de Oliveira Sandes; George Luiz Medeiros Teodoro; Maria Emília M. T. Walter; Xavier Martorell; Eduard Ayguadé; Alba Cristina Magalhaes Alves de Melo (Comput. J., 2018)

Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel® Xeon Phi™. - Jeremias M. Gomes; Alba Cristina Magalhaes Alves de Melo; Jun Kong 002; Tahsin M. Kurç; Joel H. Saltz; George Teodoro (Concurr. Comput. Pract. Exp., 2018)

Tuning for Tissue Image Segmentation Workflows for Accuracy and Performance. - Luis F. R. Taveira; Tahsin M. Kurç; Alba C. M. A. Melo; Jun Kong 002; Erich Bremer; Joel H. Saltz; George Teodoro (CoRR, 2018)

PA-Star: A disk-assisted parallel A-Star strategy with locality-sensitive hash for multiple sequence alignment. - Daniel Sundfeld; Caina Razzolini; George Teodoro; Azzedine Boukerche; Alba Cristina Magalhaes Alves de Melo (J. Parallel Distributed Comput., 2018)

Utility-Based Strategy for Balanced Cost and Availability at the Cloud Spot Market. - Gustavo Portella; Eduardo Yoshio Nakano; Genaína Nunes Rodrigues; Alba C. M. A. Melo (CLOUD, 2019)

APDCM 2019 Keynote Talk. - Alba Cristina Magalhaes Alves de Melo (IPDPS Workshops, 2019)

Introduction to HiCOMB 2019. - Alba Cristina Magalhaes Alves de Melo; Ananth Kalyanaraman (IPDPS Workshops, 2019)

Sensitivity analysis in digital pathology: Handling large number of parameters with compute expensive workflows. - Jeremias M. Gomes; Willian Barreiros Jr.; Tahsin M. Kurç; Alba C. M. A. Melo; Jun Kong 002; Joel H. Saltz; George Teodoro (Comput. Biol. Medicine, 2019)

MASA-OpenCL: Parallel pruned comparison of long DNA sequences with OpenCL. - Marco Antonio C. de Figueiredo; Edans Flavius de Oliveira Sandes; Genaína Nunes Rodrigues; George Luiz Medeiros Teodoro; Alba Cristina Magalhaes Alves de Melo (Concurr. Comput. Pract. Exp., 2019)

Statistical analysis of Amazon EC2 cloud pricing models. - Gustavo Portella; Genaína Nunes Rodrigues; Eduardo Yoshio Nakano; Alba C. M. A. Melo (Concurr. Comput. Pract. Exp., 2019)

Run-time Parameter Sensitivity Analysis Optimizations. - Eduardo Scartezini; Willian Barreiros Jr.; Tahsin M. Kurç; Jun Kong 002; Alba C. M. A. Melo; Joel H. Saltz; George Teodoro (CoRR, 2019)

Multiagent system for dynamic resource provisioning in cloud computing platforms. - Célia Ghedini Ralha; Aldo H. D. Mendes; Luiz A. Laranjeira; Aletéia P. F. Araújo; Alba C. M. A. Melo (Future Gener. Comput. Syst., 2019)

Using Multiple Fickett Bands to Accelerate Biological Sequence Comparisons. - Gabriel H. G. Silva; Edans F. de O. Sandes; George Teodoro; Alba C. M. A. Melo (J. Comput. Biol., 2019)

Multi-objective Parameter Auto-tuning for Tissue Image Segmentation Workflows. - Luis F. R. Taveira; Tahsin M. Kurç; Alba C. M. A. Melo; Jun Kong 002; Erich Bremer; Joel H. Saltz; George Teodoro (J. Digit. Imaging, 2019)

Trends on heterogeneous and innovative hardware and software systems. - Alba de Melo; Jesús Carretero 001; Per Stenström; Sanjay Ranka; Eduard Ayguadé (J. Parallel Distributed Comput., 2019)

Parallel Comparison of Huge DNA Sequences in Multiple GPUs with Block Pruning. - Marco Antonio C. de Figueiredo; Edans Flavius de Oliveira Sandes; George Teodoro; Alba C. M. A. Melo (PDP, 2020)

MASA-StarPU: Parallel Sequence Comparison with Multiple Scheduling Policies and Pruning. - Rafael A. Lopes; Samuel Thibault; Alba C. M. A. Melo (SBAC-PAD, 2020)

Optimizing parameter sensitivity analysis of large-scale microscopy image analysis workflows with multilevel computation reuse. - Willian Barreiros Jr.; Jeremias Moreira; Tahsin M. Kurç; Jun Kong 002; Alba C. M. A. Melo; Joel H. Saltz; George Teodoro (Concurr. Comput. Pract. Exp., 2020)

Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilities. - Daniel Sundfeld; George Teodoro; Jakob Hull Havgaard; Jan Gorodkin; Alba C. M. A. Melo (Concurr. Comput. Pract. Exp., 2020)

Bitmap filter: Speeding up exact set similarity joins with bitwise operations. - Edans F. de O. Sandes; George Luiz Medeiros Teodoro; Alba C. M. A. Melo (Inf. Syst., 2020)

Comparing SARS-CoV-2 Sequences using a Commercial Cloud with a Spot Instance Based Dynamic Scheduler. - Luan Teylo; Alan L. Nunes; Alba C. M. A. Melo; Cristina Boeres; Lúcia Maria de A. Drummond; Natália Florencio Martins (CCGRID, 2021)

A Fault Tolerant and Deadline Constrained Sequence Alignment Application on Cloud-Based Spot GPU Instances. - Rafaela C. Brum; Walisson P. Sousa; Alba C. M. A. Melo; Cristiana Bentes; Maria Clicia Stelling de Castro; Lúcia Maria de A. Drummond (Euro-Par, 2021)

CellHeap: A Workflow for Optimizing COVID-19 Single-Cell RNA-Seq Data Processing in the Santos Dumont Supercomputer. - Vanessa S. Silva; Maiana O. C. Costa; Maria Clicia Stelling de Castro; Helena S. Silva; Maria Emília M. T. Walter; Alba C. M. A. Melo; Kary A. C. Ocaña; Marcelo T. dos Santos; Marisa F. Nicolas; Anna Cristina C. Carvalho; Andrea Henriques-Pons; Fabrício Alves Barbosa da Silva (BSB, 2021)

Building robust pathology image analyses with uncertainty quantification. - Jeremias M. Gomes; Jun Kong 002; Tahsin M. Kurç; Alba C. M. A. Melo; Renato Ferreira 001; Joel H. Saltz; George Teodoro (Comput. Methods Programs Biomed., 2021)

A CPU-FPGA heterogeneous approach for biological sequence comparison using high-level synthesis. - Carlos Antônio Campos Jorge; Alexandre Solon Nery; Alba C. M. A. Melo; Alfredo Goldman (Concurr. Comput. Pract. Exp., 2021)

Parallel Fine-Grained Comparison of Long DNA Sequences in Homogeneous and Heterogeneous GPU Platforms With Pruning. - Marco Antonio C. de Figueiredo; João Paulo Navarro; Edans Flavius de Oliveira Sandes; George Teodoro; Alba C. M. A. Melo (IEEE Trans. Parallel Distributed Syst., 2021)

Efficient microscopy image analysis on CPU-GPU systems with cost-aware irregular data partitioning. - Willian Barreiros Jr.; Alba C. M. A. Melo; Jun Kong 002; Renato Ferreira 001; Tahsin M. Kurç; Joel H. Saltz; George Teodoro (J. Parallel Distributed Comput., 2022)

AFMC: An alignment framework for multiple computing services and providers. - Leonardo Rebouças de Carvalho; Alba Cristina Magalhaes Alves de Melo; Aletéia P. F. Araújo (Concurr. Comput. Pract. Exp., 2023)

Optimizing computational costs of Spark for SARS-CoV-2 sequences comparisons on a commercial cloud. - Alan L. Nunes; Alba C. M. A. Melo; Claude Tadonki; Cristina Boeres; Daniel de Oliveira 001; Lúcia Maria de Assumpção Drummond (Concurr. Comput. Pract. Exp., 2023)

A Novel Statistical and Neural Network Combined Approach for the Cloud Spot Market. - Gustavo Portella; Eduardo Yoshio Nakano; Genaína Nunes Rodrigues; Azzedine Boukerche; Alba C. M. A. Melo (IEEE Trans. Cloud Comput., 2023)

A Framework for Automated Parallel Execution of Scientific Multi-workflow Applications in the Cloud with Work Stealing. - Helena S. Silva; Maria Clicia Stelling de Castro; Fabrício A. B. da Silva; Alba C. M. A. Melo (Euro-Par (3), 2024)

HiCOMB 2024 Preface and Committees. - Alba Cristina Magalhaes Alves de Melo; Ananth Kalyanaraman (IPDPS (Workshops), 2024)

MAS-Cloud+: A novel multi-agent architecture with reasoning models for resource management in multiple providers. - Aldo H. D. Mendes; Michel J. F. Rosa; Marcelo Antonio Marotta; Aletéia P. F. Araújo; Alba C. M. A. Melo; Célia Ghedini Ralha (Future Gener. Comput. Syst., 2024)

Adaptive patch grid strategy for parallel protein folding using atomic burials with NAMD. - Emerson de Araujo Macedo; Alba C. M. A. Melo (J. Parallel Distributed Comput., 2024)

A Framework for Reproducible Parallel DNA String Matching. - Ricardo Régis Cavalcante Chaves; Alba Cristina Magalhaes Alves de Melo (BIOSTEC (1), 2025)

PA-Star2: Fast Optimal Multiple Sequence Alignment for Asymmetric Multicore Processors. - Daniel Sundfeld; George Teodoro; Alba C. M. A. Melo (PDP, 2025)