Pattern Discovery Allowing Wild-Cards, Substitution Matrices, and Multiple Score Functions. - Alban Mancheron; Irena Rusu (WABI, 2003)

Combinatorial characterization of the language recognized by factor and suffix oracles. - Alban Mancheron; Christophe Moan (Int. J. Found. Comput. Sci., 2005)

Extraction de Motifs Communs dans un Ensemble de Séquences.Application à l'identification de sites de liaison aux protéines dans les séquences primaires d'ADN. (Pattern Extraction from a Set of Sequences.An application to proteins binding sites identification in DNA primary sequences). - Alban Mancheron (2006)

Le FIA: un nouvel automate permettant l'extraction efficace d'itemsets fréquents dans les flots de données. - Jean-Emile Symphor; Alban Mancheron; Lionel Vinceslas; Pascal Poncelet (EGC, 2008)

FIASCO : un nouvel algorithme d'extraction d'itemsets fréquents dans les flots de données. - Lionel Vinceslas; Jean-Emile Symphor; Alban Mancheron; Pascal Poncelet (EGC, 2008)

SPAMS: A Novel Incremental Approach for Sequential Pattern Mining in Data Streams. - Lionel Vinceslas; Jean-Emile Symphor; Alban Mancheron; Pascal Poncelet (EGC (best of volume), 2009)

SPAMS: Une nouvelle approche incrémentale pour l'extraction de motifs séquentiels fréquents dans les data streams. - Lionel Vinceslas; Jean-Emile Symphor; Alban Mancheron; Pascal Poncelet (EGC, 2009)

Reliable Bacterial Genome Comparison Tools. - Eric Rivals; Alban Mancheron; Raluca Uricaru (ERCIM News, 2010)

Novel Definition and Algorithm for Chaining Fragments with Proportional Overlaps. - Raluca Uricaru; Alban Mancheron; Eric Rivals (J. Comput. Biol., 2011)

Asymptotic Limits of a New Type of Maximization Recurrence with an Application to Bioinformatics. - Kun-Mao Chao; An-Chiang Chu; Jesper Jansson 001; Richard S. Lemence; Alban Mancheron (TAMC, 2012)

RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes. - Clément Agret; Annie Chateau; Gaëtan Droc; Gautier Sarah; Manuel Ruiz; Alban Mancheron (J. Open Source Softw., 2022)