CATMAID: collaborative annotation toolkit for massive amounts of image data. - Stephan Saalfeld; Albert Cardona; Volker Hartenstein; Pavel Tomancak (Bioinform., 2009)

As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets. - Stephan Saalfeld; Albert Cardona; Volker Hartenstein; Pavel Tomancak (Bioinform., 2010)

A high-level 3D visualization API for Java and ImageJ. - Benjamin Schmid; Johannes E. Schindelin; Albert Cardona; Mark Longair; Martin Heisenberg (BMC Bioinform., 2010)

Multi-Hypothesis CRF-Segmentation of Neural Tissue in Anisotropic EM Volumes - Jan Funke; Björn Andres; Fred A. Hamprecht; Albert Cardona; Matthew Cook 001 (CoRR, 2011)

Efficient automatic 3D-reconstruction of branching neurons from EM data. - Jan Funke; Björn Andres; Fred A. Hamprecht; Albert Cardona; Matthew Cook 001 (CVPR, 2012)

Towards Semi-Automatic Reconstruction of Neural Circuits. - Albert Cardona (Neuroinformatics, 2013)

Candidate Sampling for Neuron Reconstruction from Anisotropic Electron Microscopy Volumes. - Jan Funke; Julien N. P. Martel; Stephan Gerhard; Björn Andres; Dan C. Ciresan; Alessandro Giusti; Luca Maria Gambardella; Jürgen Schmidhuber; Hanspeter Pfister; Albert Cardona; Matthew Cook 001 (MICCAI (1), 2014)

Who Is Talking to Whom: Synaptic Partner Detection in Anisotropic Volumes of Insect Brain. - Anna Kreshuk; Jan Funke; Albert Cardona; Fred A. Hamprecht (MICCAI (1), 2015)

A Tolerant Edit Distance for Evaluation and Training of Electron Microscopy Reconstruction Algorithms. - Jan Funke; Jonas Klein; Albert Cardona; Matthew Cook 001 (CoRR, 2015)

Structured learning of assignment models for neuron reconstruction to minimize topological errors. - Jan Funke; Jonas Klein; Francesc Moreno-Noguer; Albert Cardona; Matthew Cook 001 (ISBI, 2016)

Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification. - Ignacio Arganda-Carreras; Verena Kaynig; Curtis Rueden; Kevin W. Eliceiri; Johannes E. Schindelin; Albert Cardona; H. Sebastian Seung (Bioinform., 2017)

Annotated Dendrograms for Neurons From the Larval Fruit Fly Brain. - Martin Strauch; Volker Hartenstein; Ingrid V. Andrade; Albert Cardona; Dorit Merhof (VCBM@MICCAI, 2018)

Learning to rank via combining representations. - Hayden S. Helm; Amitabh Basu; Avanti Athreya; Youngser Park; Joshua T. Vogelstein; Michael Winding; Marta Zlatic; Albert Cardona; Patrick Bourke; Jonathan Larson; Christopher M. White; Carey E. Priebe (CoRR, 2020)

Distance-based positive and unlabeled learning for ranking. - Hayden S. Helm; Amitabh Basu; Avanti Athreya; Youngser Park; Joshua T. Vogelstein; Carey E. Priebe; Michael Winding; Marta Zlatic; Albert Cardona; Patrick Bourke; Jonathan Larson; Marah Ihab Abdin; et al. (Pattern Recognit., 2023)

Super-Resolution Benchmarking for 3D Image-to-Image Fusion Problem. - Daniel Franco-Barranco; Aitor González-Marfil; Albert Cardona; Arrate Muñoz-Barrutia; Ignacio Arganda-Carreras (ISBI, 2025)