Analysis of Evolutionary Patterns from Huge DNA Sequence Data. - Albert J. Vilella; Angel Blanco-Garcia; Stephan Hutter; Julio Rozas (Spanish Bioinformatics Conference, 2004)

VariScan: Analysis of evolutionary patterns from large-scale DNA sequence polymorphism data. - Albert J. Vilella; Angel Blanco-Garcia; Stephan Hutter; Julio Rozas (Bioinform., 2005)

Genome-wide DNA polymorphism analyses using VariScan. - Stephan Hutter; Albert J. Vilella; Julio Rozas (BMC Bioinform., 2006)

Ensembl 2007. - Tim J. P. Hubbard; Bronwen L. Aken; Kathryn Beal; Benoît Ballester; Mario Cáccamo; Yuan Chen 007; Laura Clarke; Guy Coates; Fiona Cunningham; Tim Cutts; Thomas A. Down; S. C. Dyer; et al. (Nucleic Acids Res., 2007)

Ensembl 2008. - Paul Flicek; Bronwen L. Aken; Kathryn Beal; Benoît Ballester; Mario Cáccamo; Yuan Chen 007; Laura Clarke; Guy Coates; Fiona Cunningham; Tim Cutts; Thomas A. Down; S. C. Dyer; et al. (Nucleic Acids Res., 2008)

TreeFam: 2008 Update. - Jue Ruan; Heng Li 002; Zhongzhong Chen; Avril Coghlan; Lachlan James M. Coin; Yiran Guo; Jean-Karim Hériché; Yafeng Hu; Karsten Kristiansen; Ruiqiang Li; Tao Liu; Alan Moses; et al. (Nucleic Acids Res., 2008)

Ensembl 2009. - Tim J. P. Hubbard; Bronwen L. Aken; Sarah C. Ayling; Benoît Ballester; Kathryn Beal; Eugene Bragin; Simon Brent; Yuan Chen 007; Peter Clapham; Laura Clarke; Guy Coates; Susan Fairley; et al. (Nucleic Acids Res., 2009)

eHive: An Artificial Intelligence workflow system for genomic analysis. - Jessica Severin; Kathryn Beal; Albert J. Vilella; Stephen Fitzgerald; Michael Schuster; Leo Gordon; Abel Ureta-Vidal; Paul Flicek; Javier Herrero (BMC Bioinform., 2010)

Ensembl's 10th year. - Paul Flicek; Bronwen L. Aken; Benoît Ballester; Kathryn Beal; Eugene Bragin; Simon Brent; Yuan Chen 007; Peter Clapham; Guy Coates; Susan Fairley; Stephen Fitzgerald; Julio Fernandez-Banet; et al. (Nucleic Acids Res., 2010)

Ensembl Genomes: Extending Ensembl across the taxonomic space. - Paul J. Kersey; Daniel Lawson; Ewan Birney; Paul S. Derwent; Matthias Haimel; Javier Herrero; Stephen Keenan; Arnaud Kerhornou; Gautier Koscielny; Andreas Kähäri; Rhoda Kinsella; Eugene Kulesha; et al. (Nucleic Acids Res., 2010)

Ensembl 2011. - Paul Flicek; M. Ridwan Amode; Daniel Barrell; Kathryn Beal; Simon Brent; Yuan Chen 007; Peter Clapham; Guy Coates; Susan Fairley; Stephen Fitzgerald; Leo Gordon; Maurice Hendrix; et al. (Nucleic Acids Res., 2011)

Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm. - Ari Löytynoja; Albert J. Vilella; Nick Goldman (Bioinform., 2012)

Sambamba: fast processing of NGS alignment formats. - Artem Tarasov; Albert J. Vilella; Edwin Cuppen; Isaac J. Nijman; Pjotr Prins (Bioinform., 2015)

Ensembl comparative genomics resources. - Javier Herrero; Matthieu Muffato; Kathryn Beal; Stephen Fitzgerald; Leo Gordon; Miguel Pignatelli; Albert J. Vilella; Stephen M. J. Searle; M. Ridwan Amode; Simon Brent; William Spooner; Eugene Kulesha; et al. (Database J. Biol. Databases Curation, 2016)

ncRNA orthologies in the vertebrate lineage. - Miguel Pignatelli; Albert J. Vilella; Matthieu Muffato; Leo Gordon; Simon White; Paul Flicek; Javier Herrero (Database J. Biol. Databases Curation, 2016)