Command line tool for calculating theoretical MS spectra for given sequences. - Andreas M. Boehm; Florian Grosse-Coosmann; Albert Sickmann (Bioinform., 2004)

Extractor for ESI quadrupole TOF tandem MS data enabled for high throughput batch processing. - Andreas M. Boehm; Robert P. Galvin; Albert Sickmann (BMC Bioinform., 2004)

Efficient analysis and extraction of MS/MS result data from MascotTM result files. - Florian Grosse-Coosmann; Andreas M. Boehm; Albert Sickmann (BMC Bioinform., 2005)

Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process. - Witold E. Wolski; Maciej Lalowski; Peter Martus; Ralf Herwig; Patrick Giavalisco; Johan Gobom; Albert Sickmann; Hans Lehrach; Knut Reinert (BMC Bioinform., 2005)

A Tool for Analyzing and Tuning Relational Database Applications: SQL Query Analyzer and Schema EnHancer (SQUASH). - Andreas M. Boehm; Matthias Wetzka; Albert Sickmann; Dietmar Seipel (Grundlagen von Datenbanken, 2006)

Squash: A Tool for Analyzing, Tuning and Refactoring Relational Database Applications. - Andreas M. Boehm; Dietmar Seipel; Albert Sickmann; Matthias Wetzka (INAP/WLP, 2007)

Precise protein quantification based on peptide quantification using iTRAQTM. - Andreas M. Boehm; Stephanie Pütz; Daniela Altenhöfer; Albert Sickmann; Michael Falk (BMC Bioinform., 2007)

compomics-utilities: an open-source Java library for computational proteomics. - Harald Barsnes; Marc Vaudel; Niklaas Colaert; Kenny Helsens; Albert Sickmann; Frode S. Berven; Lennart Martens (BMC Bioinform., 2011)

Robust Workflow for iTRAQ-Based Peptide and Protein Quantification. - Florian Beck; Julia Maria Burkhart; Jörg Geiger; René Peiman Zahedi; Albert Sickmann (Quantitative Methods in Proteomics, 2012)

iTRAQ Data Interpretation. - Marc Vaudel; Julia Maria Burkhart; René Peiman Zahedi; Lennart Martens; Albert Sickmann (Quantitative Methods in Proteomics, 2012)

PeptideMapper: efficient and versatile amino acid sequence and tag mapping. - Dominik Kopczynski; Harald Barsnes; Pål R. Njølstad; Albert Sickmann; Marc Vaudel; Robert Ahrends (Bioinform., 2017)

DISMS2: A flexible algorithm for direct proteome- wide distance calculation of LC-MS/MS runs. - Vera Rieder; Bernhard Blank-Landeshammer; Marleen Stuhr; Tilman Schell; Karsten Biß; Laxmikanth Kollipara; Achim Meyer; Markus Pfenninger; Hildegard Westphal; Albert Sickmann; Jörg Rahnenführer (BMC Bioinform., 2017)

Mouse Quantitative Proteomics Knowledgebase: reference protein concentration ranges in 20 mouse tissues using 5000 quantitative proteomics assays. - Yassene Mohammed; Pallab Bhowmick; Sarah A. Michaud; Albert Sickmann; Christoph H. Borchers (Bioinform., 2021)