DBATE: database of alternative transcripts expression. - Valerio Bianchi; Alessio Colantoni; Alberto Calderone; Gabriele Ausiello; Fabrizio Ferrè; Manuela Helmer-Citterich (Database J. Biol. Databases Curation, 2013)

Assembling biological boolean networks using manually curated databases and prediction algorithms. - Alberto Calderone (CoRR, 2014)

VirusMentha: a new resource for virus-host protein interactions. - Alberto Calderone; Luana Licata; Gianni Cesareni (Nucleic Acids Res., 2015)

Comparing Alzheimer's and Parkinson's diseases networks using graph communities structure. - Alberto Calderone; Matteo Formenti; Federica Aprea; Michele Papa; Lilia Alberghina; Anna Maria Colangelo; Paola Bertolazzi (BMC Syst. Biol., 2016)

SIGNOR: a database of causal relationships between biological entities. - Livia Perfetto; Leonardo Briganti; Alberto Calderone; Andrea Cerquone Perpetuini; Marta Iannuccelli; Francesca Langone; Luana Licata; Milica Marinkovic; Anna Mattioni; Theodora Pavlidou; Daniele Peluso; Lucia Lisa Petrilli; et al. (Nucleic Acids Res., 2016)

Revealing Disease Similarities by Text Mining. - Alberto Calderone; Luana Licata; Elisa Micarelli; Livia Perfetto; Gianni Cesareni (SWAT4LS, 2017)

SPV: a JavaScript Signaling Pathway Visualizer. - Alberto Calderone; Gianni Cesareni (Bioinform., 2018)

Analysis of Triplet Motifs in Biological Signed Oriented Graphs Suggests a Relationship Between Fine Topology and Function. - Alberto Calderone; Gianni Cesareni (CoRR, 2018)

DISNOR: a disease network open resource. - Prisca Lo Surdo; Alberto Calderone; Marta Iannuccelli; Luana Licata; Daniele Peluso; Luisa Castagnoli; Gianni Cesareni; Livia Perfetto (Nucleic Acids Res., 2018)

A Computational Analysis of Natural Languages to Build a Sentence Structure Aware Artificial Neural Network. - Alberto Calderone (CoRR, 2019)

PubSqueezer: A Text-Mining Web Tool to Transform Unstructured Documents into Structured Data. - Alberto Calderone (CoRR, 2020)

SIGNOR 2.0, the SIGnaling Network Open Resource 2.0: 2019 update. - Luana Licata; Prisca Lo Surdo; Marta Iannuccelli; Alessandro Palma; Elisa Micarelli; Livia Perfetto; Daniele Peluso; Alberto Calderone; Luisa Castagnoli; Gianni Cesareni (Nucleic Acids Res., 2020)