Formalization of Temporal Thematic Map Contents. - Alberto d'Onofrio; Elaheh Pourabbas (ACM-GIS, 2001)

A method to estimate the incidence of communicable diseases under seasonal fluctuations with application to cholera. - Elaheh Pourabbas; Alberto d'Onofrio; Maurizio Rafanelli (Appl. Math. Comput., 2001)

Globally stable vaccine-induced eradication of horizontally and vertically transmitted infectious diseases with periodic contact rates and disease-dependent demographic factors in the population. - Alberto d'Onofrio (Appl. Math. Comput., 2003)

Modelling temporal thematic map contents. - Alberto d'Onofrio; Elaheh Pourabbas (SIGMOD Rec., 2003)

Mixed pulse vaccination strategy in epidemic model with realistically distributed infectious and latent times. - Alberto d'Onofrio (Appl. Math. Comput., 2004)

Vaccination policies and nonlinear force of infection: generalization of an observation by Alexander and Moghadas (2004). - Alberto d'Onofrio (Appl. Math. Comput., 2005)

Periodically varying antiviral therapies: conditions for global stability of the virus free state. - Alberto d'Onofrio (Appl. Math. Comput., 2005)

Biomathematical analysis and extension of the new class of epidemic models proposed by Satsuma et al. (2004). - Alberto d'Onofrio (Appl. Math. Comput., 2005)

On pulse vaccination strategy in the SIR epidemic model with vertical transmission. - Alberto d'Onofrio (Appl. Math. Lett., 2005)

The response to antiangiogenic anticancer drugs that inhibit endothelial cell proliferation. - Alberto d'Onofrio; Alberto Gandolfi (Appl. Math. Comput., 2006)

Optimal control for combination therapy in cancer. - Urszula Ledzewicz; Heinz Schättler; Alberto d'Onofrio (CDC, 2008)

"Fuzzy oncology": Fuzzy noise induced bifurcations and their application to anti-tumor chemotherapy. - Alberto d'Onofrio (Appl. Math. Lett., 2008)

Metamodeling tumor-immune system interaction, tumor evasion and immunotherapy. - Alberto d'Onofrio (Math. Comput. Model., 2008)

A bi-parametric model for the tumour angiogenesis and antiangiogenesis therapy. - Alberto d'Onofrio; Paola Cerrai (Math. Comput. Model., 2009)

Metamodeling the learning-hiding competition between tumours and the immune system: A kinematic approach. - Carlo Cattani; Armando Ciancio; Alberto d'Onofrio (Math. Comput. Model., 2010)

Delay-induced oscillatory dynamics of tumour-immune system interaction. - Alberto d'Onofrio; Francesca Gatti; Paola Cerrai; Luca Freschi (Math. Comput. Model., 2010)

Globally stable endemicity for infectious diseases with information-related changes in contact patterns. - Bruno Buonomo; Alberto d'Onofrio; Deborah Lacitignola (Appl. Math. Lett., 2012)

Fine-tuning anti-tumor immunotherapies via stochastic simulations. - Giulio Caravagna; Roberto Barbuti; Alberto d'Onofrio (BMC Bioinform., 2012)

Effects of delayed immune-response in tumor immune-system interplay - Giulio Caravagna; Alex Graudenzi; Marco Antoniotti; Giancarlo Mauri; Alberto d'Onofrio (HSB, 2012)

NoisySim: exact simulation of stochastic chemically reacting systems with extrinsic bounded noises (WIP). - Giulio Caravagna; Alberto d'Onofrio; Giancarlo Mauri (SpringSim (TMS-DEVS), 2013)

Modeling the Influence of Public's Memory on the Corruption-Popularity Dilemma in Politics. - Bruno Buonomo; Alberto d'Onofrio (J. Optim. Theory Appl., 2013)

Stochastic Hybrid Automata with delayed transitions to model biochemical systems with delays. - Giulio Caravagna; Alberto d'Onofrio; Marco Antoniotti; Giancarlo Mauri (Inf. Comput., 2014)

Bounded noises as a natural tool to model extrinsic fluctuations in biomolecular networks. - Sebastiano de Franciscis; Giulio Caravagna; Alberto d'Onofrio (Nat. Comput., 2014)

The Pharmacodynamics of the p53-Mdm2 Targeting Drug Nutlin: The Role of Gene-Switching Noise. - Krzysztof Puszynski; Alberto Gandolfi; Alberto d'Onofrio (PLoS Comput. Biol., 2014)

The Technologically Integrated Oncosimulator: Combining Multiscale Cancer Modeling With Information Technology in the In Silico Oncology Context. - Georgios S. Stamatakos; Dimitra D. Dionysiou; Aran Lunzer; Robert G. Belleman; Eleni A. Kolokotroni; Eleni Ch. Georgiadi; Marius Erdt; Juliusz Pukacki; Stefan Rüping 001; Stavroula G. Giatili; Alberto d'Onofrio; Stelios Sfakianakis; et al. (IEEE J. Biomed. Health Informatics, 2014)

Statistical physics of vaccination. - Zhen Wang 004; Chris T. Bauch; Samit Bhattacharyya; Alberto d'Onofrio; Piero Manfredi; Matjaz Perc; Nicola Perra; Marcel Salathé; Dawei Zhao 001 (CoRR, 2016)

Evidence of distrust and disorientation towards immunization on online social media after contrasting political communication on vaccines. Results from an analysis of Twitter data in Italy. - Samantha Ajovalasit; Veronica Dorgali; Angelo Mazza; Alberto d'Onofrio; Piero Manfredi (CoRR, 2020)

Volatile opinions and optimal control of vaccine awareness campaigns: chaotic behaviour of the forward-backward sweep algorithm vs. heuristic direct optimization. - Rossella Della Marca; Alberto d'Onofrio (Commun. Nonlinear Sci. Numer. Simul., 2021)

A behavioural modelling approach to assess the impact of COVID-19 vaccine hesitancy. - Bruno Buonomo; Rossella Della Marca; Alberto d'Onofrio; Maria Groppi (CoRR, 2021)

On Systems of Active Particles Perturbed by Symmetric Bounded Noises: A Multiscale Kinetic Approach. - Bruno Felice Filippo Flora; Armando Ciancio; Alberto d'Onofrio (Symmetry, 2021)

J-SPACE: a Julia package for the simulation of spatial models of cancer evolution and of sequencing experiments. - Fabrizio Angaroni; Alessandro Guidi; Gianluca Ascolani; Alberto d'Onofrio; Marco Antoniotti; Alex Graudenzi (BMC Bioinform., 2022)

Epidemic model with strain-dependent transmission rate. - Malay Banerjee; Tomasz Lipniacki; Alberto d'Onofrio; Vitaly Volpert (Commun. Nonlinear Sci. Numer. Simul., 2022)

Data Symmetries and Learning in Fully Connected Neural Networks. - Fabio Anselmi; Luca Manzoni; Alberto d'Onofrio; Alex Rodriguez; Giulio Caravagna; Luca Bortolussi; Francesca Cairoli (IEEE Access, 2023)

Relating Implicit Bias and Adversarial Attacks through Intrinsic Dimension. - Lorenzo Basile; Nikos Karantzas; Alberto d'Onofrio; Luca Bortolussi; Alex Rodriguez; Fabio Anselmi (CoRR, 2023)

Local Search, Semantics, and Genetic Programming: a Global Analysis. - Fabio Anselmi; Mauro Castelli; Alberto d'Onofrio; Luca Manzoni; Luca Mariot; Martina Saletta (CoRR, 2023)

Generative abstraction of Markov population processes. - Francesca Cairoli; Fabio Anselmi; Alberto d'Onofrio; Luca Bortolussi (Theor. Comput. Sci., 2023)

A Bayesian method to infer copy number clones from single-cell RNA and ATAC sequencing. - Lucrezia Patruno; Salvatore Milite; Riccardo Bergamin; Nicola Calonaci; Alberto d'Onofrio; Fabio Anselmi; Marco Antoniotti; Alex Graudenzi; Giulio Caravagna (PLoS Comput. Biol., 2023)

Exploring Consensus Robustness in Swarms with Disruptive Individuals. - Julia Klein; Alberto d'Onofrio; Tatjana Petrov (ISoLA (2), 2024)

Deep Learning-Informed Bayesian Model-Based Analysis to Estimate Superspreading Events in Epidemic Outbreaks. - Arianna Tasciotti; Federico Urban; Federica de Dea; Luca Bortolussi; Giulio Caravagna; Alberto d'Onofrio (IEEE Access, 2024)

Optimal Epidemic Control by Social Distancing and Vaccination of an Infection Structured by Time Since Infection: The COVID-19 Case Study. - Alberto d'Onofrio; Mimmo Iannelli; Piero Manfredi; Gabriela Marinoschi (SIAM J. Appl. Math., 2024)

Increasing the quantum tunneling probability through a learned ancilla-assisted protocol. - Renzo Testa; Alejandro Rodriguez-Garcia; Alberto d'Onofrio; Andrea Trombettoni; Fabio Benatti; Fabio Anselmi (Quantum Mach. Intell., 2025)