Distill: a suite of web servers for the prediction of one-, two- and three-dimensional structural features of proteins. - Davide Baù; Alberto J. M. Martin; Catherine Mooney; Alessandro Vullo; Ian Walsh; Gianluca Pollastri (BMC Bioinform., 2006)

Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information. - Gianluca Pollastri; Alberto J. M. Martin; Catherine Mooney; Alessandro Vullo (BMC Bioinform., 2007)

Long-Range Information and Physicality Constraints Improve predicted protein Contact Maps. - Alberto J. M. Martin; Davide Baù; Alessandro Vullo; Ian Walsh; Gianluca Pollastri (J. Bioinform. Comput. Biol., 2008)

Neural Network Pairwise Interaction Fields for Protein Model Quality Assessment. - Alberto J. M. Martin; Alessandro Vullo; Gianluca Pollastri (LION, 2009)

Ab initio and homology based prediction of protein domains by recursive neural networks. - Ian Walsh; Alberto J. M. Martin; Catherine Mooney; Enrico Rubagotti; Alessandro Vullo; Gianluca Pollastri (BMC Bioinform., 2009)

MOBI: a web server to define and visualize structural mobility in NMR protein ensembles. - Alberto J. M. Martin; Ian Walsh; Silvio C. E. Tosatto (Bioinform., 2010)

RING: networking interacting residues, evolutionary information and energetics in protein structures. - Alberto J. M. Martin; Michele Vidotto; Filippo Boscariol; Tomás Di Domenico; Ian Walsh; Silvio C. E. Tosatto (Bioinform., 2011)

CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs. - Ian Walsh; Alberto J. M. Martin; Tomás Di Domenico; Alessandro Vullo; Gianluca Pollastri; Silvio C. E. Tosatto (Nucleic Acids Res., 2011)

MobiDB: a comprehensive database of intrinsic protein disorder annotations. - Tomás Di Domenico; Ian Walsh; Alberto J. M. Martin; Silvio C. E. Tosatto (Bioinform., 2012)

ESpritz: accurate and fast prediction of protein disorder. - Ian Walsh; Alberto J. M. Martin; Tomás Di Domenico; Silvio C. E. Tosatto (Bioinform., 2012)

Atlas: automatic modeling of regulation of bacterial gene expression and metabolism using rule-based languages. - Rodrigo Santibañez; Daniel Garrido; Alberto J. M. Martin (Bioinform., 2021)

Understanding relationships between epigenetic marks and their application to robust assignment of chromatin states. - Leandro Murgas; Gianluca Pollastri; Erick Riquelme; Mauricio Sáez; Alberto J. M. Martin (Briefings Bioinform., 2024)