GARSA: genomic analysis resources for sequence annotation. - Alberto M. R. Dávila; Daniel M. Lorenzini; Pablo N. Mendes; Thiago S. Satake; Gabriel R. Sousa; Linair Maria Campos; Camila J. Mazzoni; Glauber Wagner; Paulo F. Pires; Edmundo C. Grisard; Maria Cláudia Reis Cavalcanti; Maria Luiza Machado Campos (Bioinform., 2005)

In Services: Data Management for In Silico Workflows. - Fabrício Nogueira da Silva; Maria Cláudia Cavalcanti; Alberto M. R. Dávila (DEXA Workshops, 2006)

Improving model construction of profile HMMs for remote homology detection through structural alignment. - Juliana S. Bernardes; Alberto M. R. Dávila; Vítor Santos Costa; Gerson Zaverucha (BMC Bioinform., 2007)

A study of structural properties on profiles HMMs - Juliana S. Bernardes; Alberto M. R. Dávila; Vítor Santos Costa; Gerson Zaverucha (CoRR, 2007)

OrthoSearch: a scientific workflow approach to detect distant homologies on protozoans. - Sérgio Manuel Serra da Cruz; Vanessa Batista; Alberto M. R. Dávila; Edno Silva; Frederico Tosta; Clarissa Vilela; Maria Luiza Machado Campos; Rafael R. C. Cuadrat; Diogo A. Tschoeke; Marta Mattoso (SAC, 2008)

ProtozoaDB: dynamic visualization and exploration of protozoan genomes. - Alberto M. R. Dávila; Pablo N. Mendes; Glauber Wagner; Diogo A. Tschoeke; Rafael R. C. Cuadrat; Felipe Liberman; Luciana Matos; Thiago S. Satake; Kary A. C. S. Ocaña; Omar Triana; Sérgio Manuel Serra da Cruz; Henrique C. L. Jucá; et al. (Nucleic Acids Res., 2008)

Data parallelism in bioinformatics workflows using Hydra. - Fábio Coutinho; Eduardo S. Ogasawara; Daniel de Oliveira 001; Vanessa Braganholo; Alexandre A. B. Lima; Alberto M. R. Dávila; Marta Mattoso (HPDC, 2010)

Detecting distant homologies on protozoans metabolic pathways using scientific workflows. - Sérgio Manuel Serra da Cruz; Vanessa Batista; Edno Silva; Frederico Tosta; Clarissa Vilela; Rafael R. C. Cuadrat; Diogo A. Tschoeke; Alberto M. R. Dávila; Maria Luiza Machado Campos; Marta Mattoso (Int. J. Data Min. Bioinform., 2010)

A Cloud Architecture for Bioinformatics Workflows. - Hugo Saldanha; Edward de Oliveira Ribeiro; Maristela Holanda; Aletéia P. F. Araújo; Genaína Nunes Rodrigues; Maria Emília Telles Walter; João Carlos Setubal; Alberto M. R. Dávila (CLOSER, 2011)

SciPhy: A Cloud-Based Workflow for Phylogenetic Analysis of Drug Targets in Protozoan Genomes. - Kary A. C. S. Ocaña; Daniel de Oliveira 001; Eduardo S. Ogasawara; Alberto M. R. Dávila; Alexandre A. B. Lima; Marta Mattoso (BSB, 2011)

Many task computing for orthologous genes identification in protozoan genomes using Hydra. - Fábio Coutinho; Eduardo S. Ogasawara; Daniel de Oliveira 001; Vanessa Braganholo; Alexandre A. B. Lima; Alberto M. R. Dávila; Marta Mattoso (Concurr. Comput. Pract. Exp., 2011)

A framework for readapting and running bioinformatics applications in the cloud. - Edgar Sarmiento; Karin K. Breitman; Alberto M. R. Dávila; José Viterbo (RACS, 2012)

SparkBLAST: scalable BLAST processing using in-memory operations. - Marcelo Rodrigo de Castro; Catherine dos Santos Tostes; Alberto M. R. Dávila; Hermes Senger; Fabrício Alves Barbosa da Silva (BMC Bioinform., 2017)

Managing workflows on top of a cloud computing orchestrator for using heterogeneous environments on e-Science. - Abel Carrión; Miguel Caballer; Ignacio Blanquer; Nelson Kotowski; Rodrigo Jardim; Alberto M. R. Dávila (Int. J. Web Grid Serv., 2017)

Towards Machine-Readable (Meta) Data and the FAIR Value for Artificial Intelligence Exploration of COVID-19 and Cancer Research Data. - Maria Luiza Machado Campos; Eugênio Silva; Renato Cerceau; Sérgio Manuel Serra da Cruz; Fabrício Alves Barbosa da Silva; Fábio Castro Gouveia; Rodrigo Jardim; Nelson Kotowski; Giseli Rabello Lopes; Alberto M. R. Dávila (Frontiers Big Data, 2021)

Assisting Gait Stability in Walking Aid Users Exploiting Biomechanical Variables Correlation. - Andrea Fortuna; Marta Lorenzini; Younggeol Cho; Robin Arbaud; Stefano Filippo Castiglia; Mariano Serrao; Alberto M. R. Dávila; Elena De Momi; Arash Ajoudani (IEEE Robotics Autom. Lett., 2025)