Identifying communities from multiplex biological networks by randomized optimization of modularity. - Gilles Didier; Alberto Valdeolivas; Anaïs Baudot (F1000Research, 2018)

Random walk with restart on multiplex and heterogeneous biological networks. - Alberto Valdeolivas; Laurent Tichit; Claire Navarro; Sophie Perrin; Gaëlle Odelin; Nicolas Levy; Pierre Cau; Elisabeth Remy; Anaïs Baudot (Bioinform., 2019)

MultiVERSE: a multiplex and multiplex-heterogeneous network embedding approach. - Léo Pio-Lopez; Alberto Valdeolivas; Laurent Tichit; Elisabeth Remy; Anaïs Baudot (CoRR, 2020)

Computational drug repurposing against SARS-CoV-2 reveals plasma membrane cholesterol depletion as key factor of antiviral drug activity. - Szilvia Barsi; Henrietta Papp; Alberto Valdeolivas; Dániel J. Tóth; Anett Kuczmog; Mónika Madai; László Hunyady; Péter Várnai; Julio Saez-Rodriguez; Ferenc Jakab; Bence Szalai (PLoS Comput. Biol., 2022)