circFA: a FPGA-based circular RNA aligner. - Alberto Zeni; Francesco Peverelli; Enrico Cabri; Lorenzo Di Tucci; Luca Cerina; Marco D. Santambrogio (BHI, 2019)

An FPGA-Based Computing Infrastructure Tailored to Efficiently Scaffold Genome Sequences. - Alberto Zeni; Matteo Crespi; Lorenzo Di Tucci; Marco D. Santambrogio (FCCM, 2019)

Leveraging Succinct Data Structures for DNA Sequence Mapping on FPGA. - Guido Walter Di Donato; Alberto Zeni; Lorenzo Di Tucci; Marco D. Santambrogio (IPDPS Workshops, 2020)

LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment. - Alberto Zeni; Giulia Guidi; Marquita Ellis; Nan Ding 006; Marco D. Santambrogio; Steven A. Hofmeyr; Aydin Buluç; Leonid Oliker; Katherine A. Yelick (IPDPS, 2020)

Optimized Implementation of the HPCG Benchmark on Reconfigurable Hardware. - Alberto Zeni; Kenneth O'Brien; Michaela Blott; Marco D. Santambrogio (Euro-Par, 2021)

The Importance of Being X-Drop: High Performance Genome Alignment on Reconfigurable Hardware. - Alberto Zeni; Guido Walter Di Donato; Lorenzo Di Tucci; Marco Rabozzi; Marco D. Santambrogio (FCCM, 2021)

Fast Genome Analysis Leveraging Exact String Matching. - Beatrice Branchini; Sofia Breschi; Alberto Zeni; Marco D. Santambrogio (IPDPS Workshops, 2022)

Surfing the Wavefront of Genome Alignment. - Beatrice Branchini; Giulia Gerometta; Luisa Cicolini; Alberto Zeni; Emanuele Del Sozzo; Marco D. Santambrogio (ISCAS, 2022)

TSUNAMI: A GPU Implementation of the WFA Algorithm. - Giulia Gerometta; Alberto Zeni; Marco D. Santambrogio (PACT, 2023)

New Solution For a (Scaff)Old Problem: an FPGA Approach. - Alberto Zeni; Emanuele Del Sozzo; Beatrice Branchini; Lorenzo Di Tucci; Marco D. Santambrogio (IPDPS Workshops, 2023)

On the Genome Sequence Alignment FPGA Acceleration via KSW2z. - Alberto Zeni; Guido Walter Di Donato; Alessia Della Valle; Filippo Carloni; Marco D. Santambrogio (ISCAS, 2023)

Pushing the Level of Abstraction of Digital System Design: A Survey on How to Program FPGAs. - Emanuele Del Sozzo; Davide Conficconi; Alberto Zeni; Mirko Salaris; Donatella Sciuto; Marco D. Santambrogio (ACM Comput. Surv., 2023)

Leveraging Difference Recurrence Relations for High-Performance GPU Genome Alignment. - Alberto Zeni; Seth Onken; Marco Domenico Santambrogio; Mehrzad Samadi (PACT, 2024)

The Genomic Computing Revolution: Defining the Next Decades of Accelerating Genomics. - Harisankar Sadasivan; Artur Klauser; Jürgen Hench; Yatish Turakhia; Gagandeep Singh 002; Alberto Zeni; Sarah J. Beecroft; Satish Narayanasamy; Jeff Nivala; Bob Robey; Onur Mutlu; Kristof Denolf; et al. (HPEC, 2024)

Starlight: A kernel optimizer for GPU processing. - Alberto Zeni; Emanuele Del Sozzo; Eleonora D'Arnese; Davide Conficconi; Marco D. Santambrogio (J. Parallel Distributed Comput., 2024)