Automated evaluation of quaternary structures from protein crystals. - Spencer Bliven; Aleix Lafita; Althea Parker; Guido Capitani; Jose M. Duarte (PLoS Comput. Biol., 2018)

TADOSS: computational estimation of tandem domain swap stability. - Aleix Lafita; Pengfei Tian; Robert B. Best; Alex Bateman (Bioinform., 2019)

Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm. - Spencer E. Bliven; Aleix Lafita; Peter W. Rose; Guido Capitani; Andreas Prlic; Philip E. Bourne (PLoS Comput. Biol., 2019)

BioJava 5: A community driven open-source bioinformatics library. - Aleix Lafita; Spencer Bliven; Andreas Prlic; Dmytro Guzenko; Peter W. Rose; Anthony R. Bradley; Paolo Pavan; Douglas Myers-Turnbull; Yana Valasatava; Michael L. Heuer; Matt Larson; Stephen K. Burley; et al. (PLoS Comput. Biol., 2019)

Fine-tuning Protein Language Models with Deep Mutational Scanning improves Variant Effect Prediction. - Aleix Lafita; Ferran Gonzalez; Mahmoud Hossam; Paul Smyth; Jacob Deasy; Ari Allyn-Feuer; Daniel Seaton; Stephen Young (CoRR, 2024)