n-step FM-Index for Faster Pattern Matching. - Alejandro Chacón; Juan Carlos Moure; Antonio Espinosa 001; Porfidio Hernández (ICCS, 2013)

Thread-cooperative, bit-parallel computation of levenshtein distance on GPU. - Alejandro Chacón; Santiago Marco-Sola; Antonio Espinosa 001; Paolo Ribeca; Juan Carlos Moure (ICS, 2014)

FM-Index on GPU: A Cooperative Scheme to Reduce Memory Footprint. - Alejandro Chacón; Santiago Marco-Sola; Antonio Espinosa 001; Paolo Ribeca; Juan Carlos Moure (ISPA, 2014)

Boosting the FM-Index on the GPU: Effective Techniques to Mitigate Random Memory Access. - Alejandro Chacón; Santiago Marco-Sola; Antonio Espinosa 001; Paolo Ribeca; Juan Carlos Moure (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Embedded Real-time Stereo Estimation via Semi-Global Matching on the GPU. - Daniel Hernández Juárez; Alejandro Chacón; Antonio Espinosa 001; David Vázquez 001; Juan Carlos Moure; Antonio M. López 001 (ICCS, 2016)

Simulating SVE-Optimised Genomics Workloads on Gem5. - Javier Setoain; Alejandro Chacón; Filippo Spiga (CLUSTER, 2018)

Read mapping on heterogeneous systems: scalability strategies for bioinformatic primitives. - Alejandro Chacón (2021)

Towards a cognitive assistant supporting human operators in the Artificial Intelligence of Things. - Cecilio Angulo; Alejandro Chacón; Pere Ponsa (Internet Things, 2023)

gpuPairHMM: High-speed Pair-HMM Forward Algorithm for DNA Variant Calling on GPUs. - Bertil Schmidt; Felix Kallenborn; Alexander Wichmann; Alejandro Chacón; Christian Hundt 002 (CoRR, 2024)

CUDASW++4.0: ultra-fast GPU-based Smith-Waterman protein sequence database search. - Bertil Schmidt; Felix Kallenborn; Alejandro Chacón; Christian Hundt 002 (BMC Bioinform., 2024)